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Cluster: HRGMv2_1797_CGC48

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1797_9 HRGMv2_1797_9_155 167285 168397 - 1.B.52.2.1
TC HRGMv2_1797_9 HRGMv2_1797_9_156 168500 169501 - 3.A.1.2.25
TC HRGMv2_1797_9 HRGMv2_1797_9_157 169488 170510 - 3.A.1.2.25
TC HRGMv2_1797_9 HRGMv2_1797_9_158 170524 172026 - 3.A.1.2.25
TC HRGMv2_1797_9 HRGMv2_1797_9_159 172130 173086 - 3.A.1.2.25
sulfatase HRGMv2_1797_9 HRGMv2_1797_9_160 173396 173923 + S1_4
peptidase HRGMv2_1797_9 HRGMv2_1797_9_161 174122 175192 + S09.UNW
TC HRGMv2_1797_9 HRGMv2_1797_9_162 175279 177288 + 1.B.14.1.4
pfam HRGMv2_1797_9 HRGMv2_1797_9_163 177346 177690 - GGACT
TC HRGMv2_1797_9 HRGMv2_1797_9_164 177693 181469 - 9.B.22.1.2
TC HRGMv2_1797_9 HRGMv2_1797_9_165 181466 183199 - 1.B.33.2.4
pfam HRGMv2_1797_9 HRGMv2_1797_9_166 183412 184050 + PMSR
TF HRGMv2_1797_9 HRGMv2_1797_9_167 184058 185113 - LacI
CAZyme HRGMv2_1797_9 HRGMv2_1797_9_168 185304 186458 + GH177
CAZyme HRGMv2_1797_9 HRGMv2_1797_9_169 186475 187659 + GH179
pfam HRGMv2_1797_9 HRGMv2_1797_9_170 187656 188723 + GFO_IDH_MocA | GFO_IDH_MocA_C | GFO_IDH_MocA_C3
pfam HRGMv2_1797_9 HRGMv2_1797_9_171 188735 189757 + GFO_IDH_MocA | GFO_IDH_MocA_C | GFO_IDH_MocA_C3
TC HRGMv2_1797_9 HRGMv2_1797_9_172 189839 191383 + 2.A.2.5.2
CAZyme HRGMv2_1797_9 HRGMv2_1797_9_173 191394 192464 + GH5_13
TC HRGMv2_1797_9 HRGMv2_1797_9_174 192608 193948 + 9.A.40.2.2
Gene ID: HRGMv2_1797_9_155
Type: TC
Location: 167285 - 168397 (-)
Gene ID: HRGMv2_1797_9_156
Type: TC
Location: 168500 - 169501 (-)
Gene ID: HRGMv2_1797_9_157
Type: TC
Location: 169488 - 170510 (-)
Gene ID: HRGMv2_1797_9_158
Type: TC
Location: 170524 - 172026 (-)
Gene ID: HRGMv2_1797_9_159
Type: TC
Location: 172130 - 173086 (-)
Gene ID: HRGMv2_1797_9_160
Type: sulfatase
Location: 173396 - 173923 (+)
Gene ID: HRGMv2_1797_9_161
Type: peptidase
Location: 174122 - 175192 (+)
Gene ID: HRGMv2_1797_9_162
Type: TC
Location: 175279 - 177288 (+)
Gene ID: HRGMv2_1797_9_163
Type: pfam
Location: 177346 - 177690 (-)
Gene ID: HRGMv2_1797_9_164
Type: TC
Location: 177693 - 181469 (-)
Gene ID: HRGMv2_1797_9_165
Type: TC
Location: 181466 - 183199 (-)
Gene ID: HRGMv2_1797_9_166
Type: pfam
Location: 183412 - 184050 (+)
Gene ID: HRGMv2_1797_9_167
Type: TF
Location: 184058 - 185113 (-)
Gene ID: HRGMv2_1797_9_168
Type: CAZyme
Location: 185304 - 186458 (+)
Gene ID: HRGMv2_1797_9_169
Type: CAZyme
Location: 186475 - 187659 (+)
Gene ID: HRGMv2_1797_9_170
Type: pfam
Location: 187656 - 188723 (+)
Gene ID: HRGMv2_1797_9_171
Type: pfam
Location: 188735 - 189757 (+)
Gene ID: HRGMv2_1797_9_172
Type: TC
Location: 189839 - 191383 (+)
Gene ID: HRGMv2_1797_9_173
Type: CAZyme
Location: 191394 - 192464 (+)
Gene ID: HRGMv2_1797_9_174
Type: TC
Location: 192608 - 193948 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1797_9_163 vegetarian > vegan 1.11924 0.02553

🧭 Explore Read Mapping of CGC

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