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Cluster: HRGMv2_1797_CGC47

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1797_9 HRGMv2_1797_9_116 121680 122966 - 2.A.56.1.5
pfam HRGMv2_1797_9 HRGMv2_1797_9_117 122997 123506 - DctQ
TC HRGMv2_1797_9 HRGMv2_1797_9_118 123569 124546 - 2.A.56.1.9
TC HRGMv2_1797_9 HRGMv2_1797_9_119 124925 127633 - 3.A.3.4.1
TF HRGMv2_1797_9 HRGMv2_1797_9_120 128023 128970 + LacI
TC HRGMv2_1797_9 HRGMv2_1797_9_121 129128 130546 + 4.A.1.2.4
CAZyme HRGMv2_1797_9 HRGMv2_1797_9_122 130596 132248 + GH13_29
Gene ID: HRGMv2_1797_9_116
Type: TC
Location: 121680 - 122966 (-)
Gene ID: HRGMv2_1797_9_117
Type: pfam
Location: 122997 - 123506 (-)
Gene ID: HRGMv2_1797_9_118
Type: TC
Location: 123569 - 124546 (-)
Gene ID: HRGMv2_1797_9_119
Type: TC
Location: 124925 - 127633 (-)
Gene ID: HRGMv2_1797_9_120
Type: TF
Location: 128023 - 128970 (+)
Gene ID: HRGMv2_1797_9_121
Type: TC
Location: 129128 - 130546 (+)
Gene ID: HRGMv2_1797_9_122
Type: CAZyme
Location: 130596 - 132248 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1797_9_121 vegetarian > omnivore 1.19553 0.03575
HRGMv2_1797_9_122 vegetarian > omnivore 1.25631 0.00455

🧭 Explore Read Mapping of CGC

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