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Cluster: HRGMv2_1797_CGC43

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1797_8 HRGMv2_1797_8_143 160494 161696 - 3.A.15.2.1
TC HRGMv2_1797_8 HRGMv2_1797_8_144 161686 163071 - 3.A.15.2.1
TC HRGMv2_1797_8 HRGMv2_1797_8_145 163081 163518 - 3.A.15.2.1
pfam HRGMv2_1797_8 HRGMv2_1797_8_146 163749 164642 - QRPTase_C | QRPTase_N
pfam HRGMv2_1797_8 HRGMv2_1797_8_147 164730 165146 + Amidase_2
TC HRGMv2_1797_8 HRGMv2_1797_8_148 165298 166152 + 9.B.125.1.1
CAZyme HRGMv2_1797_8 HRGMv2_1797_8_149 166228 167178 - GH43_26
TC HRGMv2_1797_8 HRGMv2_1797_8_150 167178 168584 - 2.A.2.3.4
TC HRGMv2_1797_8 HRGMv2_1797_8_151 168742 170112 - 2.A.3.1.3
Gene ID: HRGMv2_1797_8_143
Type: TC
Location: 160494 - 161696 (-)
Gene ID: HRGMv2_1797_8_144
Type: TC
Location: 161686 - 163071 (-)
Gene ID: HRGMv2_1797_8_145
Type: TC
Location: 163081 - 163518 (-)
Gene ID: HRGMv2_1797_8_146
Type: pfam
Location: 163749 - 164642 (-)
Gene ID: HRGMv2_1797_8_147
Type: pfam
Location: 164730 - 165146 (+)
Gene ID: HRGMv2_1797_8_148
Type: TC
Location: 165298 - 166152 (+)
Gene ID: HRGMv2_1797_8_149
Type: CAZyme
Location: 166228 - 167178 (-)
Gene ID: HRGMv2_1797_8_150
Type: TC
Location: 167178 - 168584 (-)
Gene ID: HRGMv2_1797_8_151
Type: TC
Location: 168742 - 170112 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1797_8_149 vegan > omnivore 1.50571 0.02662
HRGMv2_1797_8_149 vegetarian > omnivore 1.84293 0.04950
HRGMv2_1797_8_150 vegetarian > vegan 1.20921 0.02553

🧭 Explore Read Mapping of CGC

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