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Cluster: HRGMv2_1797_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1797_1 HRGMv2_1797_1_301 338604 340016 - 2.A.1.3.26
TC HRGMv2_1797_1 HRGMv2_1797_1_302 340013 343093 - 2.A.6.2.12
TC HRGMv2_1797_1 HRGMv2_1797_1_303 343094 346216 - 2.A.6.2.12
TC HRGMv2_1797_1 HRGMv2_1797_1_304 346216 347463 - 8.A.1.6.2
pfam HRGMv2_1797_1 HRGMv2_1797_1_305 347902 349254 - HSP70 | HSP70
STP HRGMv2_1797_1 HRGMv2_1797_1_306 349391 350260 + AlkA_N | HhH-GPD
TC HRGMv2_1797_1 HRGMv2_1797_1_307 350228 353608 - 9.B.34.1.1
pfam HRGMv2_1797_1 HRGMv2_1797_1_308 353873 354514 + PRK
pfam HRGMv2_1797_1 HRGMv2_1797_1_309 354606 355187 + DCD_N | DCD
TC HRGMv2_1797_1 HRGMv2_1797_1_310 355213 357066 + 9.B.22.2.2
TC HRGMv2_1797_1 HRGMv2_1797_1_311 357111 358694 - 2.A.109.2.3
TC HRGMv2_1797_1 HRGMv2_1797_1_312 359349 360488 + 1.B.18.3.1
pfam HRGMv2_1797_1 HRGMv2_1797_1_313 360494 360940 + LMWPc
TC HRGMv2_1797_1 HRGMv2_1797_1_314 360940 363102 + 8.A.3.3.2
CAZyme HRGMv2_1797_1 HRGMv2_1797_1_315 363180 364022 + GT2
pfam HRGMv2_1797_1 HRGMv2_1797_1_316 364025 364513 + Hexapep
CAZyme HRGMv2_1797_1 HRGMv2_1797_1_317 364510 365727 + GT4
NULL(UNKNOWN) HRGMv2_1797_1 HRGMv2_1797_1_318 365702 366919 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_1797_1 HRGMv2_1797_1_319 366925 367671 + GT2
Gene ID: HRGMv2_1797_1_301
Type: TC
Location: 338604 - 340016 (-)
Gene ID: HRGMv2_1797_1_302
Type: TC
Location: 340013 - 343093 (-)
Gene ID: HRGMv2_1797_1_303
Type: TC
Location: 343094 - 346216 (-)
Gene ID: HRGMv2_1797_1_304
Type: TC
Location: 346216 - 347463 (-)
Gene ID: HRGMv2_1797_1_305
Type: pfam
Location: 347902 - 349254 (-)
Gene ID: HRGMv2_1797_1_306
Type: STP
Location: 349391 - 350260 (+)
Gene ID: HRGMv2_1797_1_307
Type: TC
Location: 350228 - 353608 (-)
Gene ID: HRGMv2_1797_1_308
Type: pfam
Location: 353873 - 354514 (+)
Gene ID: HRGMv2_1797_1_309
Type: pfam
Location: 354606 - 355187 (+)
Gene ID: HRGMv2_1797_1_310
Type: TC
Location: 355213 - 357066 (+)
Gene ID: HRGMv2_1797_1_311
Type: TC
Location: 357111 - 358694 (-)
Gene ID: HRGMv2_1797_1_312
Type: TC
Location: 359349 - 360488 (+)
Gene ID: HRGMv2_1797_1_313
Type: pfam
Location: 360494 - 360940 (+)
Gene ID: HRGMv2_1797_1_314
Type: TC
Location: 360940 - 363102 (+)
Gene ID: HRGMv2_1797_1_315
Type: CAZyme
Location: 363180 - 364022 (+)
Gene ID: HRGMv2_1797_1_316
Type: pfam
Location: 364025 - 364513 (+)
Gene ID: HRGMv2_1797_1_317
Type: CAZyme
Location: 364510 - 365727 (+)
Gene ID: HRGMv2_1797_1_318
Type:
Location: 365702 - 366919 (+)
Gene ID: HRGMv2_1797_1_319
Type: CAZyme
Location: 366925 - 367671 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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