Cluster: HRGMv2_1797_CGC3
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1797
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1797_1 | HRGMv2_1797_1_236 | 267199 | 268566 | + | 1.B.17.3.10 |
| TC | HRGMv2_1797_1 | HRGMv2_1797_1_237 | 268584 | 269171 | - | 9.B.27.2.7 |
| TC | HRGMv2_1797_1 | HRGMv2_1797_1_238 | 269334 | 269921 | + | 9.B.29.3.1 |
| peptidase | HRGMv2_1797_1 | HRGMv2_1797_1_239 | 270102 | 271049 | + | S11.UPW |
| pfam | HRGMv2_1797_1 | HRGMv2_1797_1_240 | 271152 | 272861 | - | FAD_binding_4 | Lact-deh-memb |
| CAZyme | HRGMv2_1797_1 | HRGMv2_1797_1_241 | 273094 | 275391 | + | GH3 |
| TC | HRGMv2_1797_1 | HRGMv2_1797_1_242 | 275623 | 276540 | + | 3.A.1.12.15 |
| TC | HRGMv2_1797_1 | HRGMv2_1797_1_243 | 276556 | 277722 | + | 3.A.1.12.15 |
| TC | HRGMv2_1797_1 | HRGMv2_1797_1_244 | 277715 | 278662 | + | 3.A.1.12.15 |
| TC | HRGMv2_1797_1 | HRGMv2_1797_1_245 | 278646 | 279377 | + | 3.A.1.12.15 |
| NULL(UNKNOWN) | HRGMv2_1797_1 | HRGMv2_1797_1_246 | 279358 | 279465 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | HRGMv2_1797_1 | HRGMv2_1797_1_247 | 279517 | 280248 | - | MerR |
| TC | HRGMv2_1797_1 | HRGMv2_1797_1_248 | 280474 | 282159 | + | 9.B.33.1.1 |
Gene ID: HRGMv2_1797_1_236
Type: TC
Location: 267199 - 268566 (+)
Type: TC
Location: 267199 - 268566 (+)
Gene ID: HRGMv2_1797_1_237
Type: TC
Location: 268584 - 269171 (-)
Type: TC
Location: 268584 - 269171 (-)
Gene ID: HRGMv2_1797_1_238
Type: TC
Location: 269334 - 269921 (+)
Type: TC
Location: 269334 - 269921 (+)
Gene ID: HRGMv2_1797_1_239
Type: peptidase
Location: 270102 - 271049 (+)
Type: peptidase
Location: 270102 - 271049 (+)
Gene ID: HRGMv2_1797_1_240
Type: pfam
Location: 271152 - 272861 (-)
Type: pfam
Location: 271152 - 272861 (-)
Gene ID: HRGMv2_1797_1_241
Type: CAZyme
Location: 273094 - 275391 (+)
Type: CAZyme
Location: 273094 - 275391 (+)
Gene ID: HRGMv2_1797_1_242
Type: TC
Location: 275623 - 276540 (+)
Type: TC
Location: 275623 - 276540 (+)
Gene ID: HRGMv2_1797_1_243
Type: TC
Location: 276556 - 277722 (+)
Type: TC
Location: 276556 - 277722 (+)
Gene ID: HRGMv2_1797_1_244
Type: TC
Location: 277715 - 278662 (+)
Type: TC
Location: 277715 - 278662 (+)
Gene ID: HRGMv2_1797_1_245
Type: TC
Location: 278646 - 279377 (+)
Type: TC
Location: 278646 - 279377 (+)
Gene ID: HRGMv2_1797_1_246
Type:
Location: 279358 - 279465 (-)
Type:
Location: 279358 - 279465 (-)
Gene ID: HRGMv2_1797_1_247
Type: TF
Location: 279517 - 280248 (-)
Type: TF
Location: 279517 - 280248 (-)
Gene ID: HRGMv2_1797_1_248
Type: TC
Location: 280474 - 282159 (+)
Type: TC
Location: 280474 - 282159 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Species
Citrobacter europaeus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.