Cluster: HRGMv2_1797_CGC29
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_1797
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1797_4 | HRGMv2_1797_4_326 | 354606 | 355946 | + | 2.A.8.1.8 |
| NULL(UNKNOWN) | HRGMv2_1797_4 | HRGMv2_1797_4_327 | 356041 | 356487 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1797_4 | HRGMv2_1797_4_328 | 356948 | 357541 | - | 2.A.95.1.5 |
| pfam | HRGMv2_1797_4 | HRGMv2_1797_4_329 | 357732 | 358838 | + | Semialdhyde_dh | Semialdhyde_dhC |
| CAZyme | HRGMv2_1797_4 | HRGMv2_1797_4_330 | 359112 | 361295 | + | CBM48 | GH13_9 |
| CAZyme | HRGMv2_1797_4 | HRGMv2_1797_4_331 | 361295 | 363271 | + | CBM48 | GH13_11 |
| pfam | HRGMv2_1797_4 | HRGMv2_1797_4_332 | 363285 | 364580 | + | NTP_transferase | NTP_transf_3 | Hexapep_GlmU |
| CAZyme | HRGMv2_1797_4 | HRGMv2_1797_4_333 | 364580 | 366013 | + | GT5 |
| CAZyme | HRGMv2_1797_4 | HRGMv2_1797_4_334 | 366033 | 368480 | + | GT35 |
| pfam | HRGMv2_1797_4 | HRGMv2_1797_4_335 | 368623 | 370131 | - | DAO | DAO_C |
| STP | HRGMv2_1797_4 | HRGMv2_1797_4_336 | 370330 | 370656 | + | Rhodanese |
| TC | HRGMv2_1797_4 | HRGMv2_1797_4_337 | 370827 | 371657 | + | 9.B.104.1.1 |
| TF | HRGMv2_1797_4 | HRGMv2_1797_4_338 | 371673 | 372431 | + | HTH_DeoR |
| TF | HRGMv2_1797_4 | HRGMv2_1797_4_339 | 372469 | 375174 | - | GerE |
| CAZyme | HRGMv2_1797_4 | HRGMv2_1797_4_340 | 375793 | 378186 | + | GT35 |
| CAZyme | HRGMv2_1797_4 | HRGMv2_1797_4_341 | 378196 | 380283 | + | GH77 |
| TC | HRGMv2_1797_4 | HRGMv2_1797_4_342 | 380372 | 381688 | - | 2.A.8.1.4 |
Gene ID: HRGMv2_1797_4_326
Type: TC
Location: 354606 - 355946 (+)
Type: TC
Location: 354606 - 355946 (+)
Gene ID: HRGMv2_1797_4_327
Type:
Location: 356041 - 356487 (-)
Type:
Location: 356041 - 356487 (-)
Gene ID: HRGMv2_1797_4_328
Type: TC
Location: 356948 - 357541 (-)
Type: TC
Location: 356948 - 357541 (-)
Gene ID: HRGMv2_1797_4_329
Type: pfam
Location: 357732 - 358838 (+)
Type: pfam
Location: 357732 - 358838 (+)
Gene ID: HRGMv2_1797_4_330
Type: CAZyme
Location: 359112 - 361295 (+)
Type: CAZyme
Location: 359112 - 361295 (+)
Gene ID: HRGMv2_1797_4_331
Type: CAZyme
Location: 361295 - 363271 (+)
Type: CAZyme
Location: 361295 - 363271 (+)
Gene ID: HRGMv2_1797_4_332
Type: pfam
Location: 363285 - 364580 (+)
Type: pfam
Location: 363285 - 364580 (+)
Gene ID: HRGMv2_1797_4_333
Type: CAZyme
Location: 364580 - 366013 (+)
Type: CAZyme
Location: 364580 - 366013 (+)
Gene ID: HRGMv2_1797_4_334
Type: CAZyme
Location: 366033 - 368480 (+)
Type: CAZyme
Location: 366033 - 368480 (+)
Gene ID: HRGMv2_1797_4_335
Type: pfam
Location: 368623 - 370131 (-)
Type: pfam
Location: 368623 - 370131 (-)
Gene ID: HRGMv2_1797_4_336
Type: STP
Location: 370330 - 370656 (+)
Type: STP
Location: 370330 - 370656 (+)
Gene ID: HRGMv2_1797_4_337
Type: TC
Location: 370827 - 371657 (+)
Type: TC
Location: 370827 - 371657 (+)
Gene ID: HRGMv2_1797_4_338
Type: TF
Location: 371673 - 372431 (+)
Type: TF
Location: 371673 - 372431 (+)
Gene ID: HRGMv2_1797_4_339
Type: TF
Location: 372469 - 375174 (-)
Type: TF
Location: 372469 - 375174 (-)
Gene ID: HRGMv2_1797_4_340
Type: CAZyme
Location: 375793 - 378186 (+)
Type: CAZyme
Location: 375793 - 378186 (+)
Gene ID: HRGMv2_1797_4_341
Type: CAZyme
Location: 378196 - 380283 (+)
Type: CAZyme
Location: 378196 - 380283 (+)
Gene ID: HRGMv2_1797_4_342
Type: TC
Location: 380372 - 381688 (-)
Type: TC
Location: 380372 - 381688 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Species
Citrobacter europaeus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1797_4_336 | vegetarian > omnivore | 1.28690 | 0.03522 |
| HRGMv2_1797_4_336 | vegetarian > vegan | 1.05994 | 0.02553 |
| HRGMv2_1797_4_338 | vegetarian > vegan | 2.03707 | 0.01763 |