dbCAN Logo

Cluster: HRGMv2_1797_CGC26

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1797_4 HRGMv2_1797_4_183 199584 199907 + 9.B.32.1.2
TC HRGMv2_1797_4 HRGMv2_1797_4_184 199913 201049 + 8.A.1.1.4
TF HRGMv2_1797_4 HRGMv2_1797_4_185 201131 202084 - HTH_1
TC HRGMv2_1797_4 HRGMv2_1797_4_186 202206 202946 + 9.B.99.1.1
CAZyme HRGMv2_1797_4 HRGMv2_1797_4_187 203038 204993 - GH127
TC HRGMv2_1797_4 HRGMv2_1797_4_188 205004 206404 - 2.A.2.3.4
Gene ID: HRGMv2_1797_4_183
Type: TC
Location: 199584 - 199907 (+)
Gene ID: HRGMv2_1797_4_184
Type: TC
Location: 199913 - 201049 (+)
Gene ID: HRGMv2_1797_4_185
Type: TF
Location: 201131 - 202084 (-)
Gene ID: HRGMv2_1797_4_186
Type: TC
Location: 202206 - 202946 (+)
Gene ID: HRGMv2_1797_4_187
Type: CAZyme
Location: 203038 - 204993 (-)
Gene ID: HRGMv2_1797_4_188
Type: TC
Location: 205004 - 206404 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1797_4_185 vegan > omnivore 2.25845 0.01250

🧭 Explore Read Mapping of CGC

← Back to Cluster List