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Cluster: HRGMv2_1797_CGC24

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1797_4 HRGMv2_1797_4_110 118750 121584 + 1.B.12.1.3
pfam HRGMv2_1797_4 HRGMv2_1797_4_111 121839 122405 - DUF6680
TC HRGMv2_1797_4 HRGMv2_1797_4_112 122899 124281 + 2.A.2.3.4
CAZyme HRGMv2_1797_4 HRGMv2_1797_4_113 124292 126610 + GH31_3
TF HRGMv2_1797_4 HRGMv2_1797_4_114 127056 128609 + HTH_11 | Mga
TC HRGMv2_1797_4 HRGMv2_1797_4_115 128636 129106 + 4.A.2.1.9
TC HRGMv2_1797_4 HRGMv2_1797_4_116 129127 129447 + 4.A.2.1.9
TC HRGMv2_1797_4 HRGMv2_1797_4_117 129474 130565 + 4.A.2.1.9
Gene ID: HRGMv2_1797_4_110
Type: TC
Location: 118750 - 121584 (+)
Gene ID: HRGMv2_1797_4_111
Type: pfam
Location: 121839 - 122405 (-)
Gene ID: HRGMv2_1797_4_112
Type: TC
Location: 122899 - 124281 (+)
Gene ID: HRGMv2_1797_4_113
Type: CAZyme
Location: 124292 - 126610 (+)
Gene ID: HRGMv2_1797_4_114
Type: TF
Location: 127056 - 128609 (+)
Gene ID: HRGMv2_1797_4_115
Type: TC
Location: 128636 - 129106 (+)
Gene ID: HRGMv2_1797_4_116
Type: TC
Location: 129127 - 129447 (+)
Gene ID: HRGMv2_1797_4_117
Type: TC
Location: 129474 - 130565 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1797_4_113 vegetarian > omnivore 1.84463 0.00455
HRGMv2_1797_4_113 vegetarian > vegan 1.59381 0.01425

🧭 Explore Read Mapping of CGC

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