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Cluster: HRGMv2_1797_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1797_4 HRGMv2_1797_4_85 94069 95262 + 2.A.1.2.26
pfam HRGMv2_1797_4 HRGMv2_1797_4_86 95348 96727 - LamB
TC HRGMv2_1797_4 HRGMv2_1797_4_87 96934 97236 - 4.A.3.2.6
CAZyme HRGMv2_1797_4 HRGMv2_1797_4_88 97249 98631 - GH1
TC HRGMv2_1797_4 HRGMv2_1797_4_89 98652 99983 - 4.A.3.2.6
TC HRGMv2_1797_4 HRGMv2_1797_4_90 99996 100310 - 4.A.3.2.6
Gene ID: HRGMv2_1797_4_85
Type: TC
Location: 94069 - 95262 (+)
Gene ID: HRGMv2_1797_4_86
Type: pfam
Location: 95348 - 96727 (-)
Gene ID: HRGMv2_1797_4_87
Type: TC
Location: 96934 - 97236 (-)
Gene ID: HRGMv2_1797_4_88
Type: CAZyme
Location: 97249 - 98631 (-)
Gene ID: HRGMv2_1797_4_89
Type: TC
Location: 98652 - 99983 (-)
Gene ID: HRGMv2_1797_4_90
Type: TC
Location: 99996 - 100310 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1797_4_86 vegetarian > omnivore 1.76716 0.02684
HRGMv2_1797_4_86 vegetarian > vegan 2.07031 0.02553
HRGMv2_1797_4_88 vegetarian > omnivore 1.70328 0.01566
HRGMv2_1797_4_88 vegetarian > vegan 2.14196 0.01425
HRGMv2_1797_4_89 vegetarian > omnivore 1.85862 0.01666
HRGMv2_1797_4_89 vegetarian > vegan 1.33316 0.02553
HRGMv2_1797_4_90 vegetarian > omnivore 2.56769 0.02185
HRGMv2_1797_4_90 vegetarian > vegan 1.84897 0.02553

🧭 Explore Read Mapping of CGC

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