Cluster: HRGMv2_1796_CGC7
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1796
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1796_6 | HRGMv2_1796_6_28 | 20559 | 22037 | - | 2.A.21.9.1 |
| TF | HRGMv2_1796_6 | HRGMv2_1796_6_29 | 22030 | 22710 | - | Trans_reg_C |
| TC | HRGMv2_1796_6 | HRGMv2_1796_6_30 | 22900 | 24285 | + | 1.B.17.3.4 |
| TC | HRGMv2_1796_6 | HRGMv2_1796_6_31 | 24314 | 24667 | + | 2.A.6.1.4 |
| TC | HRGMv2_1796_6 | HRGMv2_1796_6_32 | 24759 | 26051 | + | 2.A.6.1.4 |
| TC | HRGMv2_1796_6 | HRGMv2_1796_6_33 | 26062 | 29208 | + | 2.A.6.1.3 |
| pfam | HRGMv2_1796_6 | HRGMv2_1796_6_34 | 29295 | 29735 | + | DUF411 |
| TC | HRGMv2_1796_6 | HRGMv2_1796_6_35 | 29854 | 32307 | + | 3.A.3.5.4 |
| pfam | HRGMv2_1796_6 | HRGMv2_1796_6_36 | 32338 | 32535 | + | DUF2933 |
| TC | HRGMv2_1796_6 | HRGMv2_1796_6_37 | 32566 | 33306 | - | 1.A.34.1.3 |
| NULL(UNKNOWN) | HRGMv2_1796_6 | HRGMv2_1796_6_38 | 33590 | 34036 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_1796_6 | HRGMv2_1796_6_39 | 34271 | 36088 | + | AA1 |
| TC | HRGMv2_1796_6 | HRGMv2_1796_6_40 | 36088 | 36981 | + | 1.B.76.1.5 |
| TC | HRGMv2_1796_6 | HRGMv2_1796_6_41 | 37021 | 37401 | + | 9.B.62.1.5 |
| TC | HRGMv2_1796_6 | HRGMv2_1796_6_42 | 37406 | 38335 | + | 9.B.62.1.1 |
Gene ID: HRGMv2_1796_6_28
Type: TC
Location: 20559 - 22037 (-)
Type: TC
Location: 20559 - 22037 (-)
Gene ID: HRGMv2_1796_6_29
Type: TF
Location: 22030 - 22710 (-)
Type: TF
Location: 22030 - 22710 (-)
Gene ID: HRGMv2_1796_6_30
Type: TC
Location: 22900 - 24285 (+)
Type: TC
Location: 22900 - 24285 (+)
Gene ID: HRGMv2_1796_6_31
Type: TC
Location: 24314 - 24667 (+)
Type: TC
Location: 24314 - 24667 (+)
Gene ID: HRGMv2_1796_6_32
Type: TC
Location: 24759 - 26051 (+)
Type: TC
Location: 24759 - 26051 (+)
Gene ID: HRGMv2_1796_6_33
Type: TC
Location: 26062 - 29208 (+)
Type: TC
Location: 26062 - 29208 (+)
Gene ID: HRGMv2_1796_6_34
Type: pfam
Location: 29295 - 29735 (+)
Type: pfam
Location: 29295 - 29735 (+)
Gene ID: HRGMv2_1796_6_35
Type: TC
Location: 29854 - 32307 (+)
Type: TC
Location: 29854 - 32307 (+)
Gene ID: HRGMv2_1796_6_36
Type: pfam
Location: 32338 - 32535 (+)
Type: pfam
Location: 32338 - 32535 (+)
Gene ID: HRGMv2_1796_6_37
Type: TC
Location: 32566 - 33306 (-)
Type: TC
Location: 32566 - 33306 (-)
Gene ID: HRGMv2_1796_6_38
Type:
Location: 33590 - 34036 (-)
Type:
Location: 33590 - 34036 (-)
Gene ID: HRGMv2_1796_6_39
Type: CAZyme
Location: 34271 - 36088 (+)
Type: CAZyme
Location: 34271 - 36088 (+)
Gene ID: HRGMv2_1796_6_40
Type: TC
Location: 36088 - 36981 (+)
Type: TC
Location: 36088 - 36981 (+)
Gene ID: HRGMv2_1796_6_41
Type: TC
Location: 37021 - 37401 (+)
Type: TC
Location: 37021 - 37401 (+)
Gene ID: HRGMv2_1796_6_42
Type: TC
Location: 37406 - 38335 (+)
Type: TC
Location: 37406 - 38335 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Species
Citrobacter braakii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.