Cluster: HRGMv2_1796_CGC59
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_1796
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1796_24 | HRGMv2_1796_24_226 | 232924 | 234630 | + | GH13_18 |
| TC | HRGMv2_1796_24 | HRGMv2_1796_24_227 | 234647 | 235939 | + | 3.A.1.1.46 |
| TC | HRGMv2_1796_24 | HRGMv2_1796_24_228 | 235990 | 236841 | + | 3.A.1.1.46 |
| TC | HRGMv2_1796_24 | HRGMv2_1796_24_229 | 236828 | 237670 | + | 3.A.1.1.46 |
| pfam | HRGMv2_1796_24 | HRGMv2_1796_24_230 | 237698 | 238750 | + | ADH_zinc_N |
| pfam | HRGMv2_1796_24 | HRGMv2_1796_24_231 | 238767 | 239555 | + | AP_endonuc_2 |
| CAZyme | HRGMv2_1796_24 | HRGMv2_1796_24_232 | 239566 | 240621 | + | GH179 |
| CAZyme | HRGMv2_1796_24 | HRGMv2_1796_24_233 | 240633 | 242894 | + | GH65 |
| pfam | HRGMv2_1796_24 | HRGMv2_1796_24_234 | 242891 | 243559 | + | Hydrolase | HAD_2 |
| TC | HRGMv2_1796_24 | HRGMv2_1796_24_235 | 243570 | 244652 | + | 3.A.1.1.46 |
| TC | HRGMv2_1796_24 | HRGMv2_1796_24_236 | 244721 | 245626 | + | 1.B.21.1.1 |
Gene ID: HRGMv2_1796_24_226
Type: CAZyme
Location: 232924 - 234630 (+)
Type: CAZyme
Location: 232924 - 234630 (+)
Gene ID: HRGMv2_1796_24_227
Type: TC
Location: 234647 - 235939 (+)
Type: TC
Location: 234647 - 235939 (+)
Gene ID: HRGMv2_1796_24_228
Type: TC
Location: 235990 - 236841 (+)
Type: TC
Location: 235990 - 236841 (+)
Gene ID: HRGMv2_1796_24_229
Type: TC
Location: 236828 - 237670 (+)
Type: TC
Location: 236828 - 237670 (+)
Gene ID: HRGMv2_1796_24_230
Type: pfam
Location: 237698 - 238750 (+)
Type: pfam
Location: 237698 - 238750 (+)
Gene ID: HRGMv2_1796_24_231
Type: pfam
Location: 238767 - 239555 (+)
Type: pfam
Location: 238767 - 239555 (+)
Gene ID: HRGMv2_1796_24_232
Type: CAZyme
Location: 239566 - 240621 (+)
Type: CAZyme
Location: 239566 - 240621 (+)
Gene ID: HRGMv2_1796_24_233
Type: CAZyme
Location: 240633 - 242894 (+)
Type: CAZyme
Location: 240633 - 242894 (+)
Gene ID: HRGMv2_1796_24_234
Type: pfam
Location: 242891 - 243559 (+)
Type: pfam
Location: 242891 - 243559 (+)
Gene ID: HRGMv2_1796_24_235
Type: TC
Location: 243570 - 244652 (+)
Type: TC
Location: 243570 - 244652 (+)
Gene ID: HRGMv2_1796_24_236
Type: TC
Location: 244721 - 245626 (+)
Type: TC
Location: 244721 - 245626 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Species
Citrobacter braakii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1796_24_235 | vegan > omnivore | 2.04507 | 0.01882 |
| HRGMv2_1796_24_235 | vegetarian > omnivore | 2.31381 | 0.04185 |