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Cluster: HRGMv2_1796_CGC58

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1796_24 HRGMv2_1796_24_49 45891 47630 - 2.A.36.6.11
peptidase HRGMv2_1796_24 HRGMv2_1796_24_50 47728 48642 - S66.UPW
CAZyme HRGMv2_1796_24 HRGMv2_1796_24_51 48741 49352 + GH23
pfam HRGMv2_1796_24 HRGMv2_1796_24_52 49364 50098 - PilZ | PilZN
TC HRGMv2_1796_24 HRGMv2_1796_24_53 50299 50553 + 1.E.43.1.1
TC HRGMv2_1796_24 HRGMv2_1796_24_54 50595 52565 - 1.B.14.4.3
pfam HRGMv2_1796_24 HRGMv2_1796_24_55 52589 53446 - QRPTase_C | QRPTase_N
pfam HRGMv2_1796_24 HRGMv2_1796_24_56 53443 54255 - Methyltransf_11 | Methyltransf_12 | Methyltransf_25 | Methyltransf_31
TC HRGMv2_1796_24 HRGMv2_1796_24_57 54265 55026 - 3.A.1.14.11
TC HRGMv2_1796_24 HRGMv2_1796_24_58 55023 56009 - 3.A.1.14.11
STP HRGMv2_1796_24 HRGMv2_1796_24_59 56009 57031 - Peripla_BP_2
CAZyme HRGMv2_1796_24 HRGMv2_1796_24_60 57240 58952 - GH37
Gene ID: HRGMv2_1796_24_49
Type: TC
Location: 45891 - 47630 (-)
Gene ID: HRGMv2_1796_24_50
Type: peptidase
Location: 47728 - 48642 (-)
Gene ID: HRGMv2_1796_24_51
Type: CAZyme
Location: 48741 - 49352 (+)
Gene ID: HRGMv2_1796_24_52
Type: pfam
Location: 49364 - 50098 (-)
Gene ID: HRGMv2_1796_24_53
Type: TC
Location: 50299 - 50553 (+)
Gene ID: HRGMv2_1796_24_54
Type: TC
Location: 50595 - 52565 (-)
Gene ID: HRGMv2_1796_24_55
Type: pfam
Location: 52589 - 53446 (-)
Gene ID: HRGMv2_1796_24_56
Type: pfam
Location: 53443 - 54255 (-)
Gene ID: HRGMv2_1796_24_57
Type: TC
Location: 54265 - 55026 (-)
Gene ID: HRGMv2_1796_24_58
Type: TC
Location: 55023 - 56009 (-)
Gene ID: HRGMv2_1796_24_59
Type: STP
Location: 56009 - 57031 (-)
Gene ID: HRGMv2_1796_24_60
Type: CAZyme
Location: 57240 - 58952 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1796_24_51 vegetarian > vegan 1.03889 0.03686

🧭 Explore Read Mapping of CGC

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