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Cluster: HRGMv2_1796_CGC55

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1796_23 HRGMv2_1796_23_239 235493 237178 - 9.B.33.1.1
TF HRGMv2_1796_23 HRGMv2_1796_23_240 237404 238135 + MerR
NULL(UNKNOWN) HRGMv2_1796_23 HRGMv2_1796_23_241 238210 238317 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1796_23 HRGMv2_1796_23_242 238298 239029 - 3.A.1.12.15
TC HRGMv2_1796_23 HRGMv2_1796_23_243 239013 239960 - 3.A.1.12.15
TC HRGMv2_1796_23 HRGMv2_1796_23_244 239953 241119 - 3.A.1.12.15
TC HRGMv2_1796_23 HRGMv2_1796_23_245 241135 242052 - 3.A.1.12.15
CAZyme HRGMv2_1796_23 HRGMv2_1796_23_246 242271 244568 - GH3
pfam HRGMv2_1796_23 HRGMv2_1796_23_247 244801 246510 + FAD_binding_4 | Lact-deh-memb
peptidase HRGMv2_1796_23 HRGMv2_1796_23_248 246611 247558 - S11.UPW
TC HRGMv2_1796_23 HRGMv2_1796_23_249 247739 248326 - 9.B.29.3.1
TC HRGMv2_1796_23 HRGMv2_1796_23_250 248491 249063 + 9.B.27.2.7
TC HRGMv2_1796_23 HRGMv2_1796_23_251 249088 250455 - 1.B.17.3.10
Gene ID: HRGMv2_1796_23_239
Type: TC
Location: 235493 - 237178 (-)
Gene ID: HRGMv2_1796_23_240
Type: TF
Location: 237404 - 238135 (+)
Gene ID: HRGMv2_1796_23_241
Type:
Location: 238210 - 238317 (+)
Gene ID: HRGMv2_1796_23_242
Type: TC
Location: 238298 - 239029 (-)
Gene ID: HRGMv2_1796_23_243
Type: TC
Location: 239013 - 239960 (-)
Gene ID: HRGMv2_1796_23_244
Type: TC
Location: 239953 - 241119 (-)
Gene ID: HRGMv2_1796_23_245
Type: TC
Location: 241135 - 242052 (-)
Gene ID: HRGMv2_1796_23_246
Type: CAZyme
Location: 242271 - 244568 (-)
Gene ID: HRGMv2_1796_23_247
Type: pfam
Location: 244801 - 246510 (+)
Gene ID: HRGMv2_1796_23_248
Type: peptidase
Location: 246611 - 247558 (-)
Gene ID: HRGMv2_1796_23_249
Type: TC
Location: 247739 - 248326 (-)
Gene ID: HRGMv2_1796_23_250
Type: TC
Location: 248491 - 249063 (+)
Gene ID: HRGMv2_1796_23_251
Type: TC
Location: 249088 - 250455 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1796_23_246 vegetarian > vegan 1.52986 0.00430

🧭 Explore Read Mapping of CGC

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