Cluster: HRGMv2_1796_CGC54
🧬 Cluster Details
- Gene Count: 19
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_1796
- CGC Family ID: CGCFAM_00695
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1796_23 | HRGMv2_1796_23_171 | 154021 | 154767 | - | GT2 |
| NULL(UNKNOWN) | HRGMv2_1796_23 | HRGMv2_1796_23_172 | 154773 | 155990 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_1796_23 | HRGMv2_1796_23_173 | 155965 | 157182 | - | GT4 |
| pfam | HRGMv2_1796_23 | HRGMv2_1796_23_174 | 157179 | 157667 | - | Hexapep |
| CAZyme | HRGMv2_1796_23 | HRGMv2_1796_23_175 | 157670 | 158512 | - | GT2 |
| TC | HRGMv2_1796_23 | HRGMv2_1796_23_176 | 158633 | 160795 | - | 8.A.3.3.2 |
| pfam | HRGMv2_1796_23 | HRGMv2_1796_23_177 | 160792 | 161241 | - | LMWPc |
| TC | HRGMv2_1796_23 | HRGMv2_1796_23_178 | 161247 | 162386 | - | 1.B.18.3.1 |
| TC | HRGMv2_1796_23 | HRGMv2_1796_23_179 | 163023 | 164624 | + | 2.A.109.2.3 |
| TC | HRGMv2_1796_23 | HRGMv2_1796_23_180 | 164669 | 166519 | - | 9.B.22.2.1 |
| pfam | HRGMv2_1796_23 | HRGMv2_1796_23_181 | 166545 | 167126 | - | DCD_N | DCD |
| pfam | HRGMv2_1796_23 | HRGMv2_1796_23_182 | 167218 | 167859 | - | PRK |
| TC | HRGMv2_1796_23 | HRGMv2_1796_23_183 | 168124 | 171504 | + | 9.B.34.1.1 |
| STP | HRGMv2_1796_23 | HRGMv2_1796_23_184 | 171472 | 172341 | - | AlkA_N | HhH-GPD |
| pfam | HRGMv2_1796_23 | HRGMv2_1796_23_185 | 172478 | 173830 | + | HSP70 | HSP70 |
| TC | HRGMv2_1796_23 | HRGMv2_1796_23_186 | 174269 | 175516 | + | 8.A.1.6.2 |
| TC | HRGMv2_1796_23 | HRGMv2_1796_23_187 | 175516 | 178638 | + | 2.A.6.2.12 |
| TC | HRGMv2_1796_23 | HRGMv2_1796_23_188 | 178639 | 181713 | + | 2.A.6.2.12 |
| TC | HRGMv2_1796_23 | HRGMv2_1796_23_189 | 181710 | 183122 | + | 2.A.1.3.26 |
Gene ID: HRGMv2_1796_23_171
Type: CAZyme
Location: 154021 - 154767 (-)
Type: CAZyme
Location: 154021 - 154767 (-)
Gene ID: HRGMv2_1796_23_172
Type:
Location: 154773 - 155990 (-)
Type:
Location: 154773 - 155990 (-)
Gene ID: HRGMv2_1796_23_173
Type: CAZyme
Location: 155965 - 157182 (-)
Type: CAZyme
Location: 155965 - 157182 (-)
Gene ID: HRGMv2_1796_23_174
Type: pfam
Location: 157179 - 157667 (-)
Type: pfam
Location: 157179 - 157667 (-)
Gene ID: HRGMv2_1796_23_175
Type: CAZyme
Location: 157670 - 158512 (-)
Type: CAZyme
Location: 157670 - 158512 (-)
Gene ID: HRGMv2_1796_23_176
Type: TC
Location: 158633 - 160795 (-)
Type: TC
Location: 158633 - 160795 (-)
Gene ID: HRGMv2_1796_23_177
Type: pfam
Location: 160792 - 161241 (-)
Type: pfam
Location: 160792 - 161241 (-)
Gene ID: HRGMv2_1796_23_178
Type: TC
Location: 161247 - 162386 (-)
Type: TC
Location: 161247 - 162386 (-)
Gene ID: HRGMv2_1796_23_179
Type: TC
Location: 163023 - 164624 (+)
Type: TC
Location: 163023 - 164624 (+)
Gene ID: HRGMv2_1796_23_180
Type: TC
Location: 164669 - 166519 (-)
Type: TC
Location: 164669 - 166519 (-)
Gene ID: HRGMv2_1796_23_181
Type: pfam
Location: 166545 - 167126 (-)
Type: pfam
Location: 166545 - 167126 (-)
Gene ID: HRGMv2_1796_23_182
Type: pfam
Location: 167218 - 167859 (-)
Type: pfam
Location: 167218 - 167859 (-)
Gene ID: HRGMv2_1796_23_183
Type: TC
Location: 168124 - 171504 (+)
Type: TC
Location: 168124 - 171504 (+)
Gene ID: HRGMv2_1796_23_184
Type: STP
Location: 171472 - 172341 (-)
Type: STP
Location: 171472 - 172341 (-)
Gene ID: HRGMv2_1796_23_185
Type: pfam
Location: 172478 - 173830 (+)
Type: pfam
Location: 172478 - 173830 (+)
Gene ID: HRGMv2_1796_23_186
Type: TC
Location: 174269 - 175516 (+)
Type: TC
Location: 174269 - 175516 (+)
Gene ID: HRGMv2_1796_23_187
Type: TC
Location: 175516 - 178638 (+)
Type: TC
Location: 175516 - 178638 (+)
Gene ID: HRGMv2_1796_23_188
Type: TC
Location: 178639 - 181713 (+)
Type: TC
Location: 178639 - 181713 (+)
Gene ID: HRGMv2_1796_23_189
Type: TC
Location: 181710 - 183122 (+)
Type: TC
Location: 181710 - 183122 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Species
Citrobacter braakii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.