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Cluster: HRGMv2_1796_CGC51

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1796_23 HRGMv2_1796_23_46 34158 35645 + GH13_5
pfam HRGMv2_1796_23 HRGMv2_1796_23_47 35686 36099 - YedD
TC HRGMv2_1796_23 HRGMv2_1796_23_48 36285 37490 + 9.B.102.1.1
pfam HRGMv2_1796_23 HRGMv2_1796_23_49 37487 37720 + TusA
pfam HRGMv2_1796_23 HRGMv2_1796_23_50 37766 38080 - FliE
TC HRGMv2_1796_23 HRGMv2_1796_23_51 38297 39979 + 3.A.6.2.1
pfam HRGMv2_1796_23 HRGMv2_1796_23_52 39972 40967 + FliG_C | FliG_M | FliG_N
TC HRGMv2_1796_23 HRGMv2_1796_23_53 40960 41667 + 3.A.6.2.1
TC HRGMv2_1796_23 HRGMv2_1796_23_54 41667 43037 + 3.A.6.2.1
Gene ID: HRGMv2_1796_23_46
Type: CAZyme
Location: 34158 - 35645 (+)
Gene ID: HRGMv2_1796_23_47
Type: pfam
Location: 35686 - 36099 (-)
Gene ID: HRGMv2_1796_23_48
Type: TC
Location: 36285 - 37490 (+)
Gene ID: HRGMv2_1796_23_49
Type: pfam
Location: 37487 - 37720 (+)
Gene ID: HRGMv2_1796_23_50
Type: pfam
Location: 37766 - 38080 (-)
Gene ID: HRGMv2_1796_23_51
Type: TC
Location: 38297 - 39979 (+)
Gene ID: HRGMv2_1796_23_52
Type: pfam
Location: 39972 - 40967 (+)
Gene ID: HRGMv2_1796_23_53
Type: TC
Location: 40960 - 41667 (+)
Gene ID: HRGMv2_1796_23_54
Type: TC
Location: 41667 - 43037 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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