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Cluster: HRGMv2_1796_CGC49

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1796_22 HRGMv2_1796_22_56 55045 55359 + 4.A.2.1.10
TC HRGMv2_1796_22 HRGMv2_1796_22_57 55352 56467 + 4.A.2.1.10
CAZyme HRGMv2_1796_22 HRGMv2_1796_22_58 56555 59146 + GH38
TC HRGMv2_1796_22 HRGMv2_1796_22_59 59151 61625 + 4.A.2.1.10
TC HRGMv2_1796_22 HRGMv2_1796_22_60 61644 62822 + 2.A.1.7.10
TC HRGMv2_1796_22 HRGMv2_1796_22_61 62939 63973 - 2.A.7.6.1
pfam HRGMv2_1796_22 HRGMv2_1796_22_62 64175 65659 - Arabinose_Iso_C
pfam HRGMv2_1796_22 HRGMv2_1796_22_63 65852 66472 + Sod_Fe_N | Sod_Fe_C
TC HRGMv2_1796_22 HRGMv2_1796_22_64 66708 67691 + 2.A.10.1.2
Gene ID: HRGMv2_1796_22_56
Type: TC
Location: 55045 - 55359 (+)
Gene ID: HRGMv2_1796_22_57
Type: TC
Location: 55352 - 56467 (+)
Gene ID: HRGMv2_1796_22_58
Type: CAZyme
Location: 56555 - 59146 (+)
Gene ID: HRGMv2_1796_22_59
Type: TC
Location: 59151 - 61625 (+)
Gene ID: HRGMv2_1796_22_60
Type: TC
Location: 61644 - 62822 (+)
Gene ID: HRGMv2_1796_22_61
Type: TC
Location: 62939 - 63973 (-)
Gene ID: HRGMv2_1796_22_62
Type: pfam
Location: 64175 - 65659 (-)
Gene ID: HRGMv2_1796_22_63
Type: pfam
Location: 65852 - 66472 (+)
Gene ID: HRGMv2_1796_22_64
Type: TC
Location: 66708 - 67691 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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