Cluster: HRGMv2_1796_CGC45
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1796
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1796_19 | HRGMv2_1796_19_103 | 97365 | 98501 | + | 3.A.1.11.1 |
| TC | HRGMv2_1796_19 | HRGMv2_1796_19_104 | 98485 | 99348 | + | 3.A.1.11.1 |
| NULL(UNKNOWN) | HRGMv2_1796_19 | HRGMv2_1796_19_105 | 99499 | 99774 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_1796_19 | HRGMv2_1796_19_106 | 100127 | 100414 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_1796_19 | HRGMv2_1796_19_107 | 100434 | 109016 | - | GH94 | GT84 |
| pfam | HRGMv2_1796_19 | HRGMv2_1796_19_108 | 110035 | 110208 | - | GnsAB_toxin |
| TF | HRGMv2_1796_19 | HRGMv2_1796_19_109 | 110918 | 111130 | - | CSD |
| TC | HRGMv2_1796_19 | HRGMv2_1796_19_110 | 112471 | 113556 | + | 2.A.85.7.1 |
| TF | HRGMv2_1796_19 | HRGMv2_1796_19_111 | 114890 | 115102 | - | CSD |
| pfam | HRGMv2_1796_19 | HRGMv2_1796_19_112 | 115655 | 115867 | + | KTSC |
| TC | HRGMv2_1796_19 | HRGMv2_1796_19_113 | 116353 | 117132 | + | 3.A.1.11.1 |
| TC | HRGMv2_1796_19 | HRGMv2_1796_19_114 | 117157 | 118206 | + | 3.A.1.11.1 |
| pfam | HRGMv2_1796_19 | HRGMv2_1796_19_115 | 118258 | 119079 | - | SIR2 |
| STP | HRGMv2_1796_19 | HRGMv2_1796_19_116 | 119095 | 120006 | - | Glucokinase |
| TC | HRGMv2_1796_19 | HRGMv2_1796_19_117 | 120148 | 121392 | - | 3.A.1.125.1 |
| TC | HRGMv2_1796_19 | HRGMv2_1796_19_118 | 121392 | 122093 | - | 3.A.1.125.1 |
| TC | HRGMv2_1796_19 | HRGMv2_1796_19_119 | 122086 | 123375 | - | 3.A.1.125.1 |
Gene ID: HRGMv2_1796_19_103
Type: TC
Location: 97365 - 98501 (+)
Type: TC
Location: 97365 - 98501 (+)
Gene ID: HRGMv2_1796_19_104
Type: TC
Location: 98485 - 99348 (+)
Type: TC
Location: 98485 - 99348 (+)
Gene ID: HRGMv2_1796_19_105
Type:
Location: 99499 - 99774 (-)
Type:
Location: 99499 - 99774 (-)
Gene ID: HRGMv2_1796_19_106
Type:
Location: 100127 - 100414 (+)
Type:
Location: 100127 - 100414 (+)
Gene ID: HRGMv2_1796_19_107
Type: CAZyme
Location: 100434 - 109016 (-)
Type: CAZyme
Location: 100434 - 109016 (-)
Gene ID: HRGMv2_1796_19_108
Type: pfam
Location: 110035 - 110208 (-)
Type: pfam
Location: 110035 - 110208 (-)
Gene ID: HRGMv2_1796_19_109
Type: TF
Location: 110918 - 111130 (-)
Type: TF
Location: 110918 - 111130 (-)
Gene ID: HRGMv2_1796_19_110
Type: TC
Location: 112471 - 113556 (+)
Type: TC
Location: 112471 - 113556 (+)
Gene ID: HRGMv2_1796_19_111
Type: TF
Location: 114890 - 115102 (-)
Type: TF
Location: 114890 - 115102 (-)
Gene ID: HRGMv2_1796_19_112
Type: pfam
Location: 115655 - 115867 (+)
Type: pfam
Location: 115655 - 115867 (+)
Gene ID: HRGMv2_1796_19_113
Type: TC
Location: 116353 - 117132 (+)
Type: TC
Location: 116353 - 117132 (+)
Gene ID: HRGMv2_1796_19_114
Type: TC
Location: 117157 - 118206 (+)
Type: TC
Location: 117157 - 118206 (+)
Gene ID: HRGMv2_1796_19_115
Type: pfam
Location: 118258 - 119079 (-)
Type: pfam
Location: 118258 - 119079 (-)
Gene ID: HRGMv2_1796_19_116
Type: STP
Location: 119095 - 120006 (-)
Type: STP
Location: 119095 - 120006 (-)
Gene ID: HRGMv2_1796_19_117
Type: TC
Location: 120148 - 121392 (-)
Type: TC
Location: 120148 - 121392 (-)
Gene ID: HRGMv2_1796_19_118
Type: TC
Location: 121392 - 122093 (-)
Type: TC
Location: 121392 - 122093 (-)
Gene ID: HRGMv2_1796_19_119
Type: TC
Location: 122086 - 123375 (-)
Type: TC
Location: 122086 - 123375 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Species
Citrobacter braakii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.