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Cluster: HRGMv2_1796_CGC43

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1796_18 HRGMv2_1796_18_316 335739 337079 + 2.A.8.1.8
NULL(UNKNOWN) HRGMv2_1796_18 HRGMv2_1796_18_317 337174 337620 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1796_18 HRGMv2_1796_18_318 338109 338702 - 2.A.95.1.5
pfam HRGMv2_1796_18 HRGMv2_1796_18_319 338894 340000 + Semialdhyde_dh | Semialdhyde_dhC
CAZyme HRGMv2_1796_18 HRGMv2_1796_18_320 340365 342548 + CBM48 | GH13_9
CAZyme HRGMv2_1796_18 HRGMv2_1796_18_321 342548 344524 + CBM48 | GH13_11
pfam HRGMv2_1796_18 HRGMv2_1796_18_322 344538 345833 + NTP_transferase | NTP_transf_3 | Hexapep_GlmU
CAZyme HRGMv2_1796_18 HRGMv2_1796_18_323 345833 347266 + GT5
CAZyme HRGMv2_1796_18 HRGMv2_1796_18_324 347286 349733 + GT35
pfam HRGMv2_1796_18 HRGMv2_1796_18_325 349838 351346 - DAO | DAO_C
STP HRGMv2_1796_18 HRGMv2_1796_18_326 351545 351871 + Rhodanese
TC HRGMv2_1796_18 HRGMv2_1796_18_327 352042 352872 + 9.B.104.1.1
TF HRGMv2_1796_18 HRGMv2_1796_18_328 352888 353646 + HTH_DeoR
TF HRGMv2_1796_18 HRGMv2_1796_18_329 353688 356393 - GerE
CAZyme HRGMv2_1796_18 HRGMv2_1796_18_330 357023 359416 + GT35
CAZyme HRGMv2_1796_18 HRGMv2_1796_18_331 359426 361513 + GH77
TC HRGMv2_1796_18 HRGMv2_1796_18_332 361594 362910 - 2.A.8.1.4
Gene ID: HRGMv2_1796_18_316
Type: TC
Location: 335739 - 337079 (+)
Gene ID: HRGMv2_1796_18_317
Type:
Location: 337174 - 337620 (-)
Gene ID: HRGMv2_1796_18_318
Type: TC
Location: 338109 - 338702 (-)
Gene ID: HRGMv2_1796_18_319
Type: pfam
Location: 338894 - 340000 (+)
Gene ID: HRGMv2_1796_18_320
Type: CAZyme
Location: 340365 - 342548 (+)
Gene ID: HRGMv2_1796_18_321
Type: CAZyme
Location: 342548 - 344524 (+)
Gene ID: HRGMv2_1796_18_322
Type: pfam
Location: 344538 - 345833 (+)
Gene ID: HRGMv2_1796_18_323
Type: CAZyme
Location: 345833 - 347266 (+)
Gene ID: HRGMv2_1796_18_324
Type: CAZyme
Location: 347286 - 349733 (+)
Gene ID: HRGMv2_1796_18_325
Type: pfam
Location: 349838 - 351346 (-)
Gene ID: HRGMv2_1796_18_326
Type: STP
Location: 351545 - 351871 (+)
Gene ID: HRGMv2_1796_18_327
Type: TC
Location: 352042 - 352872 (+)
Gene ID: HRGMv2_1796_18_328
Type: TF
Location: 352888 - 353646 (+)
Gene ID: HRGMv2_1796_18_329
Type: TF
Location: 353688 - 356393 (-)
Gene ID: HRGMv2_1796_18_330
Type: CAZyme
Location: 357023 - 359416 (+)
Gene ID: HRGMv2_1796_18_331
Type: CAZyme
Location: 359426 - 361513 (+)
Gene ID: HRGMv2_1796_18_332
Type: TC
Location: 361594 - 362910 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1796_18_326 vegetarian > vegan 1.04307 0.03720
HRGMv2_1796_18_328 vegetarian > vegan 1.40222 0.01707
HRGMv2_1796_18_332 vegetarian > vegan 1.02433 0.00430

🧭 Explore Read Mapping of CGC

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