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Cluster: HRGMv2_1796_CGC40

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1796_18 HRGMv2_1796_18_176 185911 186234 + 9.B.32.1.2
TC HRGMv2_1796_18 HRGMv2_1796_18_177 186240 187376 + 8.A.1.1.4
TF HRGMv2_1796_18 HRGMv2_1796_18_178 187425 188378 - HTH_1
TC HRGMv2_1796_18 HRGMv2_1796_18_179 188500 189240 + 9.B.99.1.1
STP HRGMv2_1796_18 HRGMv2_1796_18_180 189477 189950 + Fer4
STP HRGMv2_1796_18 HRGMv2_1796_18_181 189987 191291 - Aminotran_1_2
CAZyme HRGMv2_1796_18 HRGMv2_1796_18_182 191414 193444 - GH13_19
CAZyme HRGMv2_1796_18 HRGMv2_1796_18_183 193761 194585 + GH73
TF HRGMv2_1796_18 HRGMv2_1796_18_184 194628 195806 - HTH_AraC | HTH_AraC
TC HRGMv2_1796_18 HRGMv2_1796_18_185 195887 197068 - 3.A.1.2.4
TC HRGMv2_1796_18 HRGMv2_1796_18_186 197046 198587 - 3.A.1.2.4
TC HRGMv2_1796_18 HRGMv2_1796_18_187 198697 199689 - 3.A.1.2.4
NULL(UNKNOWN) HRGMv2_1796_18 HRGMv2_1796_18_188 200055 201377 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_1796_18 HRGMv2_1796_18_189 201449 202903 + FGGY_N | FGGY_C
TC HRGMv2_1796_18 HRGMv2_1796_18_190 203070 203414 + 9.B.44.1.1
TC HRGMv2_1796_18 HRGMv2_1796_18_191 203439 203876 + 9.B.44.1.1
TC HRGMv2_1796_18 HRGMv2_1796_18_192 203917 204912 - 9.B.97.1.1
Gene ID: HRGMv2_1796_18_176
Type: TC
Location: 185911 - 186234 (+)
Gene ID: HRGMv2_1796_18_177
Type: TC
Location: 186240 - 187376 (+)
Gene ID: HRGMv2_1796_18_178
Type: TF
Location: 187425 - 188378 (-)
Gene ID: HRGMv2_1796_18_179
Type: TC
Location: 188500 - 189240 (+)
Gene ID: HRGMv2_1796_18_180
Type: STP
Location: 189477 - 189950 (+)
Gene ID: HRGMv2_1796_18_181
Type: STP
Location: 189987 - 191291 (-)
Gene ID: HRGMv2_1796_18_182
Type: CAZyme
Location: 191414 - 193444 (-)
Gene ID: HRGMv2_1796_18_183
Type: CAZyme
Location: 193761 - 194585 (+)
Gene ID: HRGMv2_1796_18_184
Type: TF
Location: 194628 - 195806 (-)
Gene ID: HRGMv2_1796_18_185
Type: TC
Location: 195887 - 197068 (-)
Gene ID: HRGMv2_1796_18_186
Type: TC
Location: 197046 - 198587 (-)
Gene ID: HRGMv2_1796_18_187
Type: TC
Location: 198697 - 199689 (-)
Gene ID: HRGMv2_1796_18_188
Type:
Location: 200055 - 201377 (+)
Gene ID: HRGMv2_1796_18_189
Type: pfam
Location: 201449 - 202903 (+)
Gene ID: HRGMv2_1796_18_190
Type: TC
Location: 203070 - 203414 (+)
Gene ID: HRGMv2_1796_18_191
Type: TC
Location: 203439 - 203876 (+)
Gene ID: HRGMv2_1796_18_192
Type: TC
Location: 203917 - 204912 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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