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Cluster: HRGMv2_1796_CGC38

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1796_18 HRGMv2_1796_18_103 107735 109117 + 2.A.2.3.4
CAZyme HRGMv2_1796_18 HRGMv2_1796_18_104 109128 111446 + GH31_3
TF HRGMv2_1796_18 HRGMv2_1796_18_105 111893 113446 + HTH_11 | Mga
TC HRGMv2_1796_18 HRGMv2_1796_18_106 113473 113943 + 4.A.2.1.9
TC HRGMv2_1796_18 HRGMv2_1796_18_107 113963 114283 + 4.A.2.1.9
TC HRGMv2_1796_18 HRGMv2_1796_18_108 114310 115401 + 4.A.2.1.9
Gene ID: HRGMv2_1796_18_103
Type: TC
Location: 107735 - 109117 (+)
Gene ID: HRGMv2_1796_18_104
Type: CAZyme
Location: 109128 - 111446 (+)
Gene ID: HRGMv2_1796_18_105
Type: TF
Location: 111893 - 113446 (+)
Gene ID: HRGMv2_1796_18_106
Type: TC
Location: 113473 - 113943 (+)
Gene ID: HRGMv2_1796_18_107
Type: TC
Location: 113963 - 114283 (+)
Gene ID: HRGMv2_1796_18_108
Type: TC
Location: 114310 - 115401 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1796_18_104 vegetarian > omnivore 2.11335 0.01287
HRGMv2_1796_18_104 vegetarian > vegan 1.08674 0.01937

🧭 Explore Read Mapping of CGC

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