Cluster: HRGMv2_1796_CGC35
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1796
- CGC Family ID: CGCFAM_02774
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1796_15 | HRGMv2_1796_15_49 | 43115 | 44416 | + | 2.A.1.1.27 |
| CAZyme | HRGMv2_1796_15 | HRGMv2_1796_15_50 | 44441 | 47107 | + | CBM67 | GH78 |
| TC | HRGMv2_1796_15 | HRGMv2_1796_15_51 | 47248 | 48399 | + | 3.A.6.2.1 |
| TC | HRGMv2_1796_15 | HRGMv2_1796_15_52 | 48392 | 50470 | + | 3.A.6.2.1 |
| pfam | HRGMv2_1796_15 | HRGMv2_1796_15_53 | 50470 | 50862 | + | FlhE |
| TC | HRGMv2_1796_15 | HRGMv2_1796_15_54 | 51125 | 52711 | + | 2.A.2.5.2 |
| CAZyme | HRGMv2_1796_15 | HRGMv2_1796_15_55 | 52712 | 53851 | + | GH105 |
Gene ID: HRGMv2_1796_15_49
Type: TC
Location: 43115 - 44416 (+)
Type: TC
Location: 43115 - 44416 (+)
Gene ID: HRGMv2_1796_15_50
Type: CAZyme
Location: 44441 - 47107 (+)
Type: CAZyme
Location: 44441 - 47107 (+)
Gene ID: HRGMv2_1796_15_51
Type: TC
Location: 47248 - 48399 (+)
Type: TC
Location: 47248 - 48399 (+)
Gene ID: HRGMv2_1796_15_52
Type: TC
Location: 48392 - 50470 (+)
Type: TC
Location: 48392 - 50470 (+)
Gene ID: HRGMv2_1796_15_53
Type: pfam
Location: 50470 - 50862 (+)
Type: pfam
Location: 50470 - 50862 (+)
Gene ID: HRGMv2_1796_15_54
Type: TC
Location: 51125 - 52711 (+)
Type: TC
Location: 51125 - 52711 (+)
Gene ID: HRGMv2_1796_15_55
Type: CAZyme
Location: 52712 - 53851 (+)
Type: CAZyme
Location: 52712 - 53851 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Species
Citrobacter braakii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.