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Cluster: HRGMv2_1796_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1796_2 HRGMv2_1796_2_38 36195 36515 + 4.A.3.2.7
TC HRGMv2_1796_2 HRGMv2_1796_2_39 36603 37961 + 4.A.3.2.1
TC HRGMv2_1796_2 HRGMv2_1796_2_40 38017 38364 + 4.A.3.2.1
TF HRGMv2_1796_2 HRGMv2_1796_2_41 38378 39217 + HTH_AraC | HTH_AraC
CAZyme HRGMv2_1796_2 HRGMv2_1796_2_42 39342 40697 + GH4
pfam HRGMv2_1796_2 HRGMv2_1796_2_43 40710 41468 + YdjC
pfam HRGMv2_1796_2 HRGMv2_1796_2_44 41505 43763 - Catalase | Catalase-rel | Catalase_C
TC HRGMv2_1796_2 HRGMv2_1796_2_45 44283 45674 - 2.A.23.1.8
Gene ID: HRGMv2_1796_2_38
Type: TC
Location: 36195 - 36515 (+)
Gene ID: HRGMv2_1796_2_39
Type: TC
Location: 36603 - 37961 (+)
Gene ID: HRGMv2_1796_2_40
Type: TC
Location: 38017 - 38364 (+)
Gene ID: HRGMv2_1796_2_41
Type: TF
Location: 38378 - 39217 (+)
Gene ID: HRGMv2_1796_2_42
Type: CAZyme
Location: 39342 - 40697 (+)
Gene ID: HRGMv2_1796_2_43
Type: pfam
Location: 40710 - 41468 (+)
Gene ID: HRGMv2_1796_2_44
Type: pfam
Location: 41505 - 43763 (-)
Gene ID: HRGMv2_1796_2_45
Type: TC
Location: 44283 - 45674 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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