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Cluster: HRGMv2_1796_CGC28

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1796_10 HRGMv2_1796_10_178 200750 203290 + GT51
TC HRGMv2_1796_10 HRGMv2_1796_10_179 203523 205757 + 1.B.14.1.2
TC HRGMv2_1796_10 HRGMv2_1796_10_180 205805 206602 + 3.A.1.14.3
TC HRGMv2_1796_10 HRGMv2_1796_10_181 206602 207492 + 3.A.1.14.3
TC HRGMv2_1796_10 HRGMv2_1796_10_182 207489 209471 + 3.A.1.14.3
pfam HRGMv2_1796_10 HRGMv2_1796_10_183 209572 210852 - Aminotran_3
TC HRGMv2_1796_10 HRGMv2_1796_10_184 211021 212442 + 2.A.49.5.5
pfam HRGMv2_1796_10 HRGMv2_1796_10_185 212524 212868 + Fe-S_biosyn
TC HRGMv2_1796_10 HRGMv2_1796_10_186 212988 213611 - 1.A.62.2.2
TC HRGMv2_1796_10 HRGMv2_1796_10_187 213649 214449 - 3.A.1.13.1
Gene ID: HRGMv2_1796_10_178
Type: CAZyme
Location: 200750 - 203290 (+)
Gene ID: HRGMv2_1796_10_179
Type: TC
Location: 203523 - 205757 (+)
Gene ID: HRGMv2_1796_10_180
Type: TC
Location: 205805 - 206602 (+)
Gene ID: HRGMv2_1796_10_181
Type: TC
Location: 206602 - 207492 (+)
Gene ID: HRGMv2_1796_10_182
Type: TC
Location: 207489 - 209471 (+)
Gene ID: HRGMv2_1796_10_183
Type: pfam
Location: 209572 - 210852 (-)
Gene ID: HRGMv2_1796_10_184
Type: TC
Location: 211021 - 212442 (+)
Gene ID: HRGMv2_1796_10_185
Type: pfam
Location: 212524 - 212868 (+)
Gene ID: HRGMv2_1796_10_186
Type: TC
Location: 212988 - 213611 (-)
Gene ID: HRGMv2_1796_10_187
Type: TC
Location: 213649 - 214449 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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