Cluster: HRGMv2_1796_CGC25
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1796
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1796_10 | HRGMv2_1796_10_138 | 155232 | 156434 | - | 3.A.15.2.1 |
| TC | HRGMv2_1796_10 | HRGMv2_1796_10_139 | 156424 | 157809 | - | 3.A.15.2.1 |
| TC | HRGMv2_1796_10 | HRGMv2_1796_10_140 | 157819 | 158256 | - | 3.A.15.2.1 |
| pfam | HRGMv2_1796_10 | HRGMv2_1796_10_141 | 158501 | 159394 | - | QRPTase_C | QRPTase_N |
| pfam | HRGMv2_1796_10 | HRGMv2_1796_10_142 | 159482 | 160045 | + | Amidase_2 |
| TC | HRGMv2_1796_10 | HRGMv2_1796_10_143 | 160042 | 160896 | + | 9.B.125.1.1 |
| CAZyme | HRGMv2_1796_10 | HRGMv2_1796_10_144 | 160981 | 161931 | - | GH43_26 |
| TC | HRGMv2_1796_10 | HRGMv2_1796_10_145 | 161931 | 163337 | - | 2.A.2.3.4 |
| TC | HRGMv2_1796_10 | HRGMv2_1796_10_146 | 163495 | 164865 | - | 2.A.3.1.3 |
Gene ID: HRGMv2_1796_10_138
Type: TC
Location: 155232 - 156434 (-)
Type: TC
Location: 155232 - 156434 (-)
Gene ID: HRGMv2_1796_10_139
Type: TC
Location: 156424 - 157809 (-)
Type: TC
Location: 156424 - 157809 (-)
Gene ID: HRGMv2_1796_10_140
Type: TC
Location: 157819 - 158256 (-)
Type: TC
Location: 157819 - 158256 (-)
Gene ID: HRGMv2_1796_10_141
Type: pfam
Location: 158501 - 159394 (-)
Type: pfam
Location: 158501 - 159394 (-)
Gene ID: HRGMv2_1796_10_142
Type: pfam
Location: 159482 - 160045 (+)
Type: pfam
Location: 159482 - 160045 (+)
Gene ID: HRGMv2_1796_10_143
Type: TC
Location: 160042 - 160896 (+)
Type: TC
Location: 160042 - 160896 (+)
Gene ID: HRGMv2_1796_10_144
Type: CAZyme
Location: 160981 - 161931 (-)
Type: CAZyme
Location: 160981 - 161931 (-)
Gene ID: HRGMv2_1796_10_145
Type: TC
Location: 161931 - 163337 (-)
Type: TC
Location: 161931 - 163337 (-)
Gene ID: HRGMv2_1796_10_146
Type: TC
Location: 163495 - 164865 (-)
Type: TC
Location: 163495 - 164865 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Species
Citrobacter braakii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1796_10_141 | vegetarian > vegan | 1.04513 | 0.03686 |
| HRGMv2_1796_10_144 | vegan > omnivore | 1.27752 | 0.04288 |
| HRGMv2_1796_10_144 | vegetarian > omnivore | 2.33847 | 0.02296 |