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Cluster: HRGMv2_1796_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1796_9 HRGMv2_1796_9_172 188790 190034 + 1.A.23.4.5
TF HRGMv2_1796_9 HRGMv2_1796_9_173 190038 191018 - LacI
CAZyme HRGMv2_1796_9 HRGMv2_1796_9_174 191096 192247 - GH109
pfam HRGMv2_1796_9 HRGMv2_1796_9_175 192244 193272 - AP_endonuc_2
TC HRGMv2_1796_9 HRGMv2_1796_9_176 193288 194529 - 2.A.1.10.4
TC HRGMv2_1796_9 HRGMv2_1796_9_177 194695 196134 - 2.A.3.1.1
NULL(UNKNOWN) HRGMv2_1796_9 HRGMv2_1796_9_178 196336 197511 + NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_1796_9 HRGMv2_1796_9_179 198130 198708 + GerE
TC HRGMv2_1796_9 HRGMv2_1796_9_180 198905 208237 + 1.B.12.5.2
Gene ID: HRGMv2_1796_9_172
Type: TC
Location: 188790 - 190034 (+)
Gene ID: HRGMv2_1796_9_173
Type: TF
Location: 190038 - 191018 (-)
Gene ID: HRGMv2_1796_9_174
Type: CAZyme
Location: 191096 - 192247 (-)
Gene ID: HRGMv2_1796_9_175
Type: pfam
Location: 192244 - 193272 (-)
Gene ID: HRGMv2_1796_9_176
Type: TC
Location: 193288 - 194529 (-)
Gene ID: HRGMv2_1796_9_177
Type: TC
Location: 194695 - 196134 (-)
Gene ID: HRGMv2_1796_9_178
Type:
Location: 196336 - 197511 (+)
Gene ID: HRGMv2_1796_9_179
Type: TF
Location: 198130 - 198708 (+)
Gene ID: HRGMv2_1796_9_180
Type: TC
Location: 198905 - 208237 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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