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Cluster: HRGMv2_1796_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1796_8 HRGMv2_1796_8_369 399360 399653 - 3.A.1.27.3
TC HRGMv2_1796_8 HRGMv2_1796_8_370 399653 400288 - 3.A.1.27.3
TC HRGMv2_1796_8 HRGMv2_1796_8_371 400307 400864 - 3.A.1.27.3
TC HRGMv2_1796_8 HRGMv2_1796_8_372 400869 401651 - 3.A.1.27.3
TC HRGMv2_1796_8 HRGMv2_1796_8_373 401659 402471 - 3.A.1.27.3
TC HRGMv2_1796_8 HRGMv2_1796_8_374 402686 403663 + 2.A.19.5.1
STP HRGMv2_1796_8 HRGMv2_1796_8_375 403677 404663 + CBS | CBS | SIS
pfam HRGMv2_1796_8 HRGMv2_1796_8_376 404684 405250 + Hydrolase_3
TC HRGMv2_1796_8 HRGMv2_1796_8_377 405247 405822 + 1.B.42.1.2
TC HRGMv2_1796_8 HRGMv2_1796_8_378 405791 406339 + 1.B.42.1.2
TC HRGMv2_1796_8 HRGMv2_1796_8_379 406346 407071 + 1.B.42.1.2
pfam HRGMv2_1796_8 HRGMv2_1796_8_380 407118 408551 + Sigma54_AID | Sigma54_DBD | Sigma54_CBD
pfam HRGMv2_1796_8 HRGMv2_1796_8_381 408574 408861 + Ribosomal_S30AE
TC HRGMv2_1796_8 HRGMv2_1796_8_382 408945 409436 + 4.A.2.1.7
pfam HRGMv2_1796_8 HRGMv2_1796_8_383 409482 410336 + RapZ-like_N | PapZ_C
TC HRGMv2_1796_8 HRGMv2_1796_8_384 410333 410605 + 8.A.8.1.5
CAZyme HRGMv2_1796_8 HRGMv2_1796_8_385 410692 411411 - GT51
Gene ID: HRGMv2_1796_8_369
Type: TC
Location: 399360 - 399653 (-)
Gene ID: HRGMv2_1796_8_370
Type: TC
Location: 399653 - 400288 (-)
Gene ID: HRGMv2_1796_8_371
Type: TC
Location: 400307 - 400864 (-)
Gene ID: HRGMv2_1796_8_372
Type: TC
Location: 400869 - 401651 (-)
Gene ID: HRGMv2_1796_8_373
Type: TC
Location: 401659 - 402471 (-)
Gene ID: HRGMv2_1796_8_374
Type: TC
Location: 402686 - 403663 (+)
Gene ID: HRGMv2_1796_8_375
Type: STP
Location: 403677 - 404663 (+)
Gene ID: HRGMv2_1796_8_376
Type: pfam
Location: 404684 - 405250 (+)
Gene ID: HRGMv2_1796_8_377
Type: TC
Location: 405247 - 405822 (+)
Gene ID: HRGMv2_1796_8_378
Type: TC
Location: 405791 - 406339 (+)
Gene ID: HRGMv2_1796_8_379
Type: TC
Location: 406346 - 407071 (+)
Gene ID: HRGMv2_1796_8_380
Type: pfam
Location: 407118 - 408551 (+)
Gene ID: HRGMv2_1796_8_381
Type: pfam
Location: 408574 - 408861 (+)
Gene ID: HRGMv2_1796_8_382
Type: TC
Location: 408945 - 409436 (+)
Gene ID: HRGMv2_1796_8_383
Type: pfam
Location: 409482 - 410336 (+)
Gene ID: HRGMv2_1796_8_384
Type: TC
Location: 410333 - 410605 (+)
Gene ID: HRGMv2_1796_8_385
Type: CAZyme
Location: 410692 - 411411 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1796_8_370 vegetarian > vegan 1.00529 0.03686

🧭 Explore Read Mapping of CGC

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