Cluster: HRGMv2_1796_CGC1
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1796
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1796_1 | HRGMv2_1796_1_2 | 1491 | 4199 | - | 3.A.3.4.1 |
| TF | HRGMv2_1796_1 | HRGMv2_1796_1_3 | 4589 | 5536 | + | LacI |
| TC | HRGMv2_1796_1 | HRGMv2_1796_1_4 | 5694 | 7112 | + | 4.A.1.2.4 |
| CAZyme | HRGMv2_1796_1 | HRGMv2_1796_1_5 | 7162 | 8814 | + | GH13_29 |
Gene ID: HRGMv2_1796_1_2
Type: TC
Location: 1491 - 4199 (-)
Type: TC
Location: 1491 - 4199 (-)
Gene ID: HRGMv2_1796_1_3
Type: TF
Location: 4589 - 5536 (+)
Type: TF
Location: 4589 - 5536 (+)
Gene ID: HRGMv2_1796_1_4
Type: TC
Location: 5694 - 7112 (+)
Type: TC
Location: 5694 - 7112 (+)
Gene ID: HRGMv2_1796_1_5
Type: CAZyme
Location: 7162 - 8814 (+)
Type: CAZyme
Location: 7162 - 8814 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Species
Citrobacter braakii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1796_1_5 | vegan > omnivore | 1.61956 | 0.03483 |
| HRGMv2_1796_1_5 | vegetarian > omnivore | 1.53808 | 0.04185 |