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Cluster: HRGMv2_1794_CGC51

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1794_11 HRGMv2_1794_11_121 119385 120872 + 3.A.1.2.8
TC HRGMv2_1794_11 HRGMv2_1794_11_122 120869 121903 + 3.A.1.2.8
TC HRGMv2_1794_11 HRGMv2_1794_11_123 121904 122902 + 3.A.1.2.8
TC HRGMv2_1794_11 HRGMv2_1794_11_124 122904 123905 + 3.A.1.2.8
pfam HRGMv2_1794_11 HRGMv2_1794_11_125 123917 124804 + DeoC
pfam HRGMv2_1794_11 HRGMv2_1794_11_126 124801 125097 + ABM
CAZyme HRGMv2_1794_11 HRGMv2_1794_11_127 125138 127489 - GH63
NULL(UNKNOWN) HRGMv2_1794_11 HRGMv2_1794_11_128 127507 128565 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1794_11 HRGMv2_1794_11_129 128579 130012 - 2.A.3.7.4
TC HRGMv2_1794_11 HRGMv2_1794_11_130 130242 131675 - 2.A.3.7.4
pfam HRGMv2_1794_11 HRGMv2_1794_11_131 131770 132219 - DUF386
CAZyme HRGMv2_1794_11 HRGMv2_1794_11_132 132216 135308 - GH2
Gene ID: HRGMv2_1794_11_121
Type: TC
Location: 119385 - 120872 (+)
Gene ID: HRGMv2_1794_11_122
Type: TC
Location: 120869 - 121903 (+)
Gene ID: HRGMv2_1794_11_123
Type: TC
Location: 121904 - 122902 (+)
Gene ID: HRGMv2_1794_11_124
Type: TC
Location: 122904 - 123905 (+)
Gene ID: HRGMv2_1794_11_125
Type: pfam
Location: 123917 - 124804 (+)
Gene ID: HRGMv2_1794_11_126
Type: pfam
Location: 124801 - 125097 (+)
Gene ID: HRGMv2_1794_11_127
Type: CAZyme
Location: 125138 - 127489 (-)
Gene ID: HRGMv2_1794_11_128
Type:
Location: 127507 - 128565 (-)
Gene ID: HRGMv2_1794_11_129
Type: TC
Location: 128579 - 130012 (-)
Gene ID: HRGMv2_1794_11_130
Type: TC
Location: 130242 - 131675 (-)
Gene ID: HRGMv2_1794_11_131
Type: pfam
Location: 131770 - 132219 (-)
Gene ID: HRGMv2_1794_11_132
Type: CAZyme
Location: 132216 - 135308 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1794_11_123 vegan > omnivore 1.05183 0.03094
HRGMv2_1794_11_126 vegetarian > vegan 1.06870 0.03242

🧭 Explore Read Mapping of CGC

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