Cluster: HRGMv2_1788_CGC9
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1788
- CGC Family ID: CGCFAM_07791
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1788_1 | HRGMv2_1788_1_987 | 1183434 | 1184384 | - | 1.A.35.1.1 |
| TF | HRGMv2_1788_1 | HRGMv2_1788_1_988 | 1184640 | 1185296 | - | GntR |
| pfam | HRGMv2_1788_1 | HRGMv2_1788_1_989 | 1185547 | 1187985 | + | PHO4 |
| TC | HRGMv2_1788_1 | HRGMv2_1788_1_990 | 1188245 | 1189858 | + | 1.B.52.2.1 |
| NULL(UNKNOWN) | HRGMv2_1788_1 | HRGMv2_1788_1_991 | 1190057 | 1190662 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| STP | HRGMv2_1788_1 | HRGMv2_1788_1_992 | 1190653 | 1191447 | + | CbiA |
| CAZyme | HRGMv2_1788_1 | HRGMv2_1788_1_993 | 1191460 | 1193565 | + | GT2 |
| pfam | HRGMv2_1788_1 | HRGMv2_1788_1_994 | 1193567 | 1196023 | + | BcsB |
| TC | HRGMv2_1788_1 | HRGMv2_1788_1_995 | 1196044 | 1200228 | + | 1.B.55.3.1 |
| pfam | HRGMv2_1788_1 | HRGMv2_1788_1_996 | 1200229 | 1200675 | + | Cellsynth_D |
| CAZyme | HRGMv2_1788_1 | HRGMv2_1788_1_997 | 1200843 | 1201856 | + | GH8 |
| pfam | HRGMv2_1788_1 | HRGMv2_1788_1_998 | 1202055 | 1202909 | + | DAHP_synth_1 |
| pfam | HRGMv2_1788_1 | HRGMv2_1788_1_999 | 1202982 | 1203806 | - | Lipoprotein_9 |
| TC | HRGMv2_1788_1 | HRGMv2_1788_1_1000 | 1203888 | 1204562 | - | 3.A.1.24.5 |
| TC | HRGMv2_1788_1 | HRGMv2_1788_1_1001 | 1204559 | 1205623 | - | 3.A.1.24.2 |
Gene ID: HRGMv2_1788_1_987
Type: TC
Location: 1183434 - 1184384 (-)
Type: TC
Location: 1183434 - 1184384 (-)
Gene ID: HRGMv2_1788_1_988
Type: TF
Location: 1184640 - 1185296 (-)
Type: TF
Location: 1184640 - 1185296 (-)
Gene ID: HRGMv2_1788_1_989
Type: pfam
Location: 1185547 - 1187985 (+)
Type: pfam
Location: 1185547 - 1187985 (+)
Gene ID: HRGMv2_1788_1_990
Type: TC
Location: 1188245 - 1189858 (+)
Type: TC
Location: 1188245 - 1189858 (+)
Gene ID: HRGMv2_1788_1_991
Type:
Location: 1190057 - 1190662 (+)
Type:
Location: 1190057 - 1190662 (+)
Gene ID: HRGMv2_1788_1_992
Type: STP
Location: 1190653 - 1191447 (+)
Type: STP
Location: 1190653 - 1191447 (+)
Gene ID: HRGMv2_1788_1_993
Type: CAZyme
Location: 1191460 - 1193565 (+)
Type: CAZyme
Location: 1191460 - 1193565 (+)
Gene ID: HRGMv2_1788_1_994
Type: pfam
Location: 1193567 - 1196023 (+)
Type: pfam
Location: 1193567 - 1196023 (+)
Gene ID: HRGMv2_1788_1_995
Type: TC
Location: 1196044 - 1200228 (+)
Type: TC
Location: 1196044 - 1200228 (+)
Gene ID: HRGMv2_1788_1_996
Type: pfam
Location: 1200229 - 1200675 (+)
Type: pfam
Location: 1200229 - 1200675 (+)
Gene ID: HRGMv2_1788_1_997
Type: CAZyme
Location: 1200843 - 1201856 (+)
Type: CAZyme
Location: 1200843 - 1201856 (+)
Gene ID: HRGMv2_1788_1_998
Type: pfam
Location: 1202055 - 1202909 (+)
Type: pfam
Location: 1202055 - 1202909 (+)
Gene ID: HRGMv2_1788_1_999
Type: pfam
Location: 1202982 - 1203806 (-)
Type: pfam
Location: 1202982 - 1203806 (-)
Gene ID: HRGMv2_1788_1_1000
Type: TC
Location: 1203888 - 1204562 (-)
Type: TC
Location: 1203888 - 1204562 (-)
Gene ID: HRGMv2_1788_1_1001
Type: TC
Location: 1204559 - 1205623 (-)
Type: TC
Location: 1204559 - 1205623 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Succinivibrionaceae
Genus
Succinivibrio
Species
Succinivibrio sp000431835
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.