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Cluster: HRGMv2_1788_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1788_1 HRGMv2_1788_1_472 549599 550342 - 1.B.33.1.3
pfam HRGMv2_1788_1 HRGMv2_1788_1_473 550438 551412 + PseudoU_synth_2 | S4
pfam HRGMv2_1788_1 HRGMv2_1788_1_474 551396 552181 + Cu-oxidase_4
TC HRGMv2_1788_1 HRGMv2_1788_1_475 552469 555051 + 3.A.9.1.2
NULL(UNKNOWN) HRGMv2_1788_1 HRGMv2_1788_1_476 560884 561705 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1788_1 HRGMv2_1788_1_477 561888 563108 - 3.A.1.1.2
CAZyme HRGMv2_1788_1 HRGMv2_1788_1_478 563271 565316 - GH42
CAZyme HRGMv2_1788_1 HRGMv2_1788_1_479 565335 566582 - GH53
TC HRGMv2_1788_1 HRGMv2_1788_1_480 566611 567459 - 3.A.1.1.2
TC HRGMv2_1788_1 HRGMv2_1788_1_481 567473 568774 - 3.A.1.1.2
TC HRGMv2_1788_1 HRGMv2_1788_1_482 568866 570083 - 3.A.1.1.2
TC HRGMv2_1788_1 HRGMv2_1788_1_483 570434 571576 + 3.A.1.1.4
TC HRGMv2_1788_1 HRGMv2_1788_1_484 572033 573253 + 3.A.1.1.2
TF HRGMv2_1788_1 HRGMv2_1788_1_485 573391 574497 - LacI
TC HRGMv2_1788_1 HRGMv2_1788_1_486 574872 576323 + 1.B.3.1.1
Gene ID: HRGMv2_1788_1_472
Type: TC
Location: 549599 - 550342 (-)
Gene ID: HRGMv2_1788_1_473
Type: pfam
Location: 550438 - 551412 (+)
Gene ID: HRGMv2_1788_1_474
Type: pfam
Location: 551396 - 552181 (+)
Gene ID: HRGMv2_1788_1_475
Type: TC
Location: 552469 - 555051 (+)
Gene ID: HRGMv2_1788_1_476
Type:
Location: 560884 - 561705 (-)
Gene ID: HRGMv2_1788_1_477
Type: TC
Location: 561888 - 563108 (-)
Gene ID: HRGMv2_1788_1_478
Type: CAZyme
Location: 563271 - 565316 (-)
Gene ID: HRGMv2_1788_1_479
Type: CAZyme
Location: 565335 - 566582 (-)
Gene ID: HRGMv2_1788_1_480
Type: TC
Location: 566611 - 567459 (-)
Gene ID: HRGMv2_1788_1_481
Type: TC
Location: 567473 - 568774 (-)
Gene ID: HRGMv2_1788_1_482
Type: TC
Location: 568866 - 570083 (-)
Gene ID: HRGMv2_1788_1_483
Type: TC
Location: 570434 - 571576 (+)
Gene ID: HRGMv2_1788_1_484
Type: TC
Location: 572033 - 573253 (+)
Gene ID: HRGMv2_1788_1_485
Type: TF
Location: 573391 - 574497 (-)
Gene ID: HRGMv2_1788_1_486
Type: TC
Location: 574872 - 576323 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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