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Cluster: HRGMv2_1788_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1788_1 HRGMv2_1788_1_246 294784 295839 - GT9
pfam HRGMv2_1788_1 HRGMv2_1788_1_247 295948 296688 + RIO1 | Kdo
TC HRGMv2_1788_1 HRGMv2_1788_1_248 296758 297303 + 2.A.37.1.2
CAZyme HRGMv2_1788_1 HRGMv2_1788_1_249 297359 298636 - GT30
CAZyme HRGMv2_1788_1 HRGMv2_1788_1_250 298646 299692 - GT9
pfam HRGMv2_1788_1 HRGMv2_1788_1_251 299852 300814 + 3Beta_HSD | Epimerase | Polysacc_synt_2 | GDP_Man_Dehyd
TC HRGMv2_1788_1 HRGMv2_1788_1_252 300796 301659 + 9.B.104.1.1
Gene ID: HRGMv2_1788_1_246
Type: CAZyme
Location: 294784 - 295839 (-)
Gene ID: HRGMv2_1788_1_247
Type: pfam
Location: 295948 - 296688 (+)
Gene ID: HRGMv2_1788_1_248
Type: TC
Location: 296758 - 297303 (+)
Gene ID: HRGMv2_1788_1_249
Type: CAZyme
Location: 297359 - 298636 (-)
Gene ID: HRGMv2_1788_1_250
Type: CAZyme
Location: 298646 - 299692 (-)
Gene ID: HRGMv2_1788_1_251
Type: pfam
Location: 299852 - 300814 (+)
Gene ID: HRGMv2_1788_1_252
Type: TC
Location: 300796 - 301659 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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