Cluster: HRGMv2_1788_CGC20
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1788
- CGC Family ID: CGCFAM_01211
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1788_1 | HRGMv2_1788_1_2001 | 2388989 | 2390026 | + | GH23 |
| pfam | HRGMv2_1788_1 | HRGMv2_1788_1_2002 | 2390162 | 2392291 | - | BRCT | DNA_ligase_aden | DNA_ligase_ZBD | DNA_ligase_OB | HHH_2 | HHH_5 |
| pfam | HRGMv2_1788_1 | HRGMv2_1788_1_2003 | 2392297 | 2393043 | - | ZipA_C |
| TC | HRGMv2_1788_1 | HRGMv2_1788_1_2004 | 2393341 | 2394117 | + | 2.A.121.1.1 |
| TC | HRGMv2_1788_1 | HRGMv2_1788_1_2005 | 2394247 | 2395893 | + | 8.A.7.1.3 |
| TC | HRGMv2_1788_1 | HRGMv2_1788_1_2006 | 2395957 | 2396493 | + | 4.A.1.1.1 |
| NULL(UNKNOWN) | HRGMv2_1788_1 | HRGMv2_1788_1_2007 | 2396624 | 2397319 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1788_1 | HRGMv2_1788_1_2008 | 2397749 | 2399179 | - | 3.D.2.1.1 |
| TC | HRGMv2_1788_1 | HRGMv2_1788_1_2009 | 2399201 | 2400736 | - | 3.D.2.1.1 |
| pfam | HRGMv2_1788_1 | HRGMv2_1788_1_2010 | 2401210 | 2401515 | - | PDDEXK_9 |
| pfam | HRGMv2_1788_1 | HRGMv2_1788_1_2011 | 2401792 | 2402883 | - | AAA-ATPase_like |
| TC | HRGMv2_1788_1 | HRGMv2_1788_1_2012 | 2403261 | 2405606 | + | 3.A.20.1.1 |
Gene ID: HRGMv2_1788_1_2001
Type: CAZyme
Location: 2388989 - 2390026 (+)
Type: CAZyme
Location: 2388989 - 2390026 (+)
Gene ID: HRGMv2_1788_1_2002
Type: pfam
Location: 2390162 - 2392291 (-)
Type: pfam
Location: 2390162 - 2392291 (-)
Gene ID: HRGMv2_1788_1_2003
Type: pfam
Location: 2392297 - 2393043 (-)
Type: pfam
Location: 2392297 - 2393043 (-)
Gene ID: HRGMv2_1788_1_2004
Type: TC
Location: 2393341 - 2394117 (+)
Type: TC
Location: 2393341 - 2394117 (+)
Gene ID: HRGMv2_1788_1_2005
Type: TC
Location: 2394247 - 2395893 (+)
Type: TC
Location: 2394247 - 2395893 (+)
Gene ID: HRGMv2_1788_1_2006
Type: TC
Location: 2395957 - 2396493 (+)
Type: TC
Location: 2395957 - 2396493 (+)
Gene ID: HRGMv2_1788_1_2007
Type:
Location: 2396624 - 2397319 (-)
Type:
Location: 2396624 - 2397319 (-)
Gene ID: HRGMv2_1788_1_2008
Type: TC
Location: 2397749 - 2399179 (-)
Type: TC
Location: 2397749 - 2399179 (-)
Gene ID: HRGMv2_1788_1_2009
Type: TC
Location: 2399201 - 2400736 (-)
Type: TC
Location: 2399201 - 2400736 (-)
Gene ID: HRGMv2_1788_1_2010
Type: pfam
Location: 2401210 - 2401515 (-)
Type: pfam
Location: 2401210 - 2401515 (-)
Gene ID: HRGMv2_1788_1_2011
Type: pfam
Location: 2401792 - 2402883 (-)
Type: pfam
Location: 2401792 - 2402883 (-)
Gene ID: HRGMv2_1788_1_2012
Type: TC
Location: 2403261 - 2405606 (+)
Type: TC
Location: 2403261 - 2405606 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Succinivibrionaceae
Genus
Succinivibrio
Species
Succinivibrio sp000431835
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.