Cluster: HRGMv2_1788_CGC14
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1788
- CGC Family ID: CGCFAM_01210
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1788_1 | HRGMv2_1788_1_1399 | 1656292 | 1658142 | - | GH13_19 |
| TC | HRGMv2_1788_1 | HRGMv2_1788_1_1400 | 1659130 | 1659708 | - | 4.F.1.1.8 |
| pfam | HRGMv2_1788_1 | HRGMv2_1788_1_1401 | 1659748 | 1660533 | - | PseudoU_synth_1 | PseudoU_synth_1 |
| pfam | HRGMv2_1788_1 | HRGMv2_1788_1_1402 | 1660537 | 1660959 | - | GtrA_DPMS_TM |
| CAZyme | HRGMv2_1788_1 | HRGMv2_1788_1_1403 | 1660959 | 1661969 | - | GT2 |
Gene ID: HRGMv2_1788_1_1399
Type: CAZyme
Location: 1656292 - 1658142 (-)
Type: CAZyme
Location: 1656292 - 1658142 (-)
Gene ID: HRGMv2_1788_1_1400
Type: TC
Location: 1659130 - 1659708 (-)
Type: TC
Location: 1659130 - 1659708 (-)
Gene ID: HRGMv2_1788_1_1401
Type: pfam
Location: 1659748 - 1660533 (-)
Type: pfam
Location: 1659748 - 1660533 (-)
Gene ID: HRGMv2_1788_1_1402
Type: pfam
Location: 1660537 - 1660959 (-)
Type: pfam
Location: 1660537 - 1660959 (-)
Gene ID: HRGMv2_1788_1_1403
Type: CAZyme
Location: 1660959 - 1661969 (-)
Type: CAZyme
Location: 1660959 - 1661969 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Succinivibrionaceae
Genus
Succinivibrio
Species
Succinivibrio sp000431835
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.