Cluster: HRGMv2_1788_CGC10
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1788
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1788_1 | HRGMv2_1788_1_1036 | 1241380 | 1241985 | - | 2.A.115.2.14 |
| TC | HRGMv2_1788_1 | HRGMv2_1788_1_1037 | 1241997 | 1242779 | - | 3.A.1.3.18 |
| TC | HRGMv2_1788_1 | HRGMv2_1788_1_1038 | 1242788 | 1243510 | - | 3.A.1.3.16 |
| TC | HRGMv2_1788_1 | HRGMv2_1788_1_1039 | 1243600 | 1244448 | - | 3.A.1.3.16 |
| TC | HRGMv2_1788_1 | HRGMv2_1788_1_1040 | 1244480 | 1245208 | - | 3.A.1.3.16 |
| STP | HRGMv2_1788_1 | HRGMv2_1788_1_1041 | 1245655 | 1246134 | - | GGDEF |
| pfam | HRGMv2_1788_1 | HRGMv2_1788_1_1042 | 1246602 | 1247147 | - | DsbB |
| TC | HRGMv2_1788_1 | HRGMv2_1788_1_1043 | 1247312 | 1248892 | - | 2.A.34.1.1 |
| NULL(UNKNOWN) | HRGMv2_1788_1 | HRGMv2_1788_1_1044 | 1249103 | 1249876 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1788_1 | HRGMv2_1788_1_1045 | 1249883 | 1251616 | - | 2.A.81.1.5 |
| NULL(UNKNOWN) | HRGMv2_1788_1 | HRGMv2_1788_1_1046 | 1251949 | 1252188 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1788_1 | HRGMv2_1788_1_1047 | 1252206 | 1252994 | + | 2.A.79.2.1 |
| pfam | HRGMv2_1788_1 | HRGMv2_1788_1_1048 | 1253010 | 1253507 | + | ThrE_2 |
| pfam | HRGMv2_1788_1 | HRGMv2_1788_1_1049 | 1253572 | 1256892 | - | TerB_C |
| CAZyme | HRGMv2_1788_1 | HRGMv2_1788_1_1050 | 1256972 | 1258048 | - | GH84 |
Gene ID: HRGMv2_1788_1_1036
Type: TC
Location: 1241380 - 1241985 (-)
Type: TC
Location: 1241380 - 1241985 (-)
Gene ID: HRGMv2_1788_1_1037
Type: TC
Location: 1241997 - 1242779 (-)
Type: TC
Location: 1241997 - 1242779 (-)
Gene ID: HRGMv2_1788_1_1038
Type: TC
Location: 1242788 - 1243510 (-)
Type: TC
Location: 1242788 - 1243510 (-)
Gene ID: HRGMv2_1788_1_1039
Type: TC
Location: 1243600 - 1244448 (-)
Type: TC
Location: 1243600 - 1244448 (-)
Gene ID: HRGMv2_1788_1_1040
Type: TC
Location: 1244480 - 1245208 (-)
Type: TC
Location: 1244480 - 1245208 (-)
Gene ID: HRGMv2_1788_1_1041
Type: STP
Location: 1245655 - 1246134 (-)
Type: STP
Location: 1245655 - 1246134 (-)
Gene ID: HRGMv2_1788_1_1042
Type: pfam
Location: 1246602 - 1247147 (-)
Type: pfam
Location: 1246602 - 1247147 (-)
Gene ID: HRGMv2_1788_1_1043
Type: TC
Location: 1247312 - 1248892 (-)
Type: TC
Location: 1247312 - 1248892 (-)
Gene ID: HRGMv2_1788_1_1044
Type:
Location: 1249103 - 1249876 (-)
Type:
Location: 1249103 - 1249876 (-)
Gene ID: HRGMv2_1788_1_1045
Type: TC
Location: 1249883 - 1251616 (-)
Type: TC
Location: 1249883 - 1251616 (-)
Gene ID: HRGMv2_1788_1_1046
Type:
Location: 1251949 - 1252188 (+)
Type:
Location: 1251949 - 1252188 (+)
Gene ID: HRGMv2_1788_1_1047
Type: TC
Location: 1252206 - 1252994 (+)
Type: TC
Location: 1252206 - 1252994 (+)
Gene ID: HRGMv2_1788_1_1048
Type: pfam
Location: 1253010 - 1253507 (+)
Type: pfam
Location: 1253010 - 1253507 (+)
Gene ID: HRGMv2_1788_1_1049
Type: pfam
Location: 1253572 - 1256892 (-)
Type: pfam
Location: 1253572 - 1256892 (-)
Gene ID: HRGMv2_1788_1_1050
Type: CAZyme
Location: 1256972 - 1258048 (-)
Type: CAZyme
Location: 1256972 - 1258048 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Succinivibrionaceae
Genus
Succinivibrio
Species
Succinivibrio sp000431835
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.