Cluster: HRGMv2_1788_CGC1
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1788
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1788_1 | HRGMv2_1788_1_68 | 78773 | 80431 | + | GH13_37 |
| NULL(UNKNOWN) | HRGMv2_1788_1 | HRGMv2_1788_1_69 | 80665 | 81408 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | HRGMv2_1788_1 | HRGMv2_1788_1_70 | 81632 | 82006 | - | HTH_11 |
| TC | HRGMv2_1788_1 | HRGMv2_1788_1_71 | 82030 | 82698 | + | 2.A.13.1.2 |
Gene ID: HRGMv2_1788_1_68
Type: CAZyme
Location: 78773 - 80431 (+)
Type: CAZyme
Location: 78773 - 80431 (+)
Gene ID: HRGMv2_1788_1_69
Type:
Location: 80665 - 81408 (+)
Type:
Location: 80665 - 81408 (+)
Gene ID: HRGMv2_1788_1_70
Type: TF
Location: 81632 - 82006 (-)
Type: TF
Location: 81632 - 82006 (-)
Gene ID: HRGMv2_1788_1_71
Type: TC
Location: 82030 - 82698 (+)
Type: TC
Location: 82030 - 82698 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Succinivibrionaceae
Genus
Succinivibrio
Species
Succinivibrio sp000431835
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.