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Cluster: HRGMv2_1754_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1754_3 HRGMv2_1754_3_161 165306 166349 + GH3
pfam HRGMv2_1754_3 HRGMv2_1754_3_162 166346 167518 + MTS | tRNA_U5-meth_tr | Methyltransf_25 | Methyltransf_31
TC HRGMv2_1754_3 HRGMv2_1754_3_163 167552 168385 - 3.A.1.15.4
TC HRGMv2_1754_3 HRGMv2_1754_3_164 168378 169229 - 3.A.1.15.4
TC HRGMv2_1754_3 HRGMv2_1754_3_165 169233 170129 - 3.A.1.15.4
TC HRGMv2_1754_3 HRGMv2_1754_3_166 170129 171010 - 3.A.1.15.4
Gene ID: HRGMv2_1754_3_161
Type: CAZyme
Location: 165306 - 166349 (+)
Gene ID: HRGMv2_1754_3_162
Type: pfam
Location: 166346 - 167518 (+)
Gene ID: HRGMv2_1754_3_163
Type: TC
Location: 167552 - 168385 (-)
Gene ID: HRGMv2_1754_3_164
Type: TC
Location: 168378 - 169229 (-)
Gene ID: HRGMv2_1754_3_165
Type: TC
Location: 169233 - 170129 (-)
Gene ID: HRGMv2_1754_3_166
Type: TC
Location: 170129 - 171010 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1754_3_162 vegetarian > omnivore 1.11815 0.00460
HRGMv2_1754_3_163 vegan > omnivore 2.10999 0.00732
HRGMv2_1754_3_163 vegetarian > omnivore 1.30972 0.00460
HRGMv2_1754_3_164 vegan > omnivore 2.29369 0.00732
HRGMv2_1754_3_164 vegetarian > omnivore 1.38572 0.00460

🧭 Explore Read Mapping of CGC

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