Cluster: HRGMv2_1754_CGC8
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1754
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1754_3 | HRGMv2_1754_3_74 | 75169 | 75996 | + | CE1 |
| NULL(UNKNOWN) | HRGMv2_1754_3 | HRGMv2_1754_3_75 | 76601 | 76840 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1754_3 | HRGMv2_1754_3_76 | 77017 | 80250 | - | 1.B.12.5.3 |
| pfam | HRGMv2_1754_3 | HRGMv2_1754_3_77 | 80456 | 81472 | + | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NmrA | NAD_binding_4 | KR | GDP_Man_Dehyd |
| TC | HRGMv2_1754_3 | HRGMv2_1754_3_78 | 81553 | 82827 | + | 2.A.1.25.3 |
Gene ID: HRGMv2_1754_3_74
Type: CAZyme
Location: 75169 - 75996 (+)
Type: CAZyme
Location: 75169 - 75996 (+)
Gene ID: HRGMv2_1754_3_75
Type:
Location: 76601 - 76840 (+)
Type:
Location: 76601 - 76840 (+)
Gene ID: HRGMv2_1754_3_76
Type: TC
Location: 77017 - 80250 (-)
Type: TC
Location: 77017 - 80250 (-)
Gene ID: HRGMv2_1754_3_77
Type: pfam
Location: 80456 - 81472 (+)
Type: pfam
Location: 80456 - 81472 (+)
Gene ID: HRGMv2_1754_3_78
Type: TC
Location: 81553 - 82827 (+)
Type: TC
Location: 81553 - 82827 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1754_3_77 | vegan > omnivore | 1.01381 | 0.00742 |