Cluster: HRGMv2_1754_CGC7
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1754
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1754_3 | HRGMv2_1754_3_8 | 8326 | 9696 | + | 2.A.25.1.4 |
| pfam | HRGMv2_1754_3 | HRGMv2_1754_3_9 | 9938 | 10255 | + | Ribosomal_S30AE |
| TC | HRGMv2_1754_3 | HRGMv2_1754_3_10 | 10323 | 12623 | - | 1.B.14.2.1 |
| pfam | HRGMv2_1754_3 | HRGMv2_1754_3_11 | 12783 | 13877 | + | TbpB_B_D |
| NULL(UNKNOWN) | HRGMv2_1754_3 | HRGMv2_1754_3_12 | 13925 | 14068 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_1754_3 | HRGMv2_1754_3_13 | 14124 | 15518 | - | GH23 |
| TC | HRGMv2_1754_3 | HRGMv2_1754_3_14 | 15614 | 17452 | - | 3.A.18.1.1 |
Gene ID: HRGMv2_1754_3_8
Type: TC
Location: 8326 - 9696 (+)
Type: TC
Location: 8326 - 9696 (+)
Gene ID: HRGMv2_1754_3_9
Type: pfam
Location: 9938 - 10255 (+)
Type: pfam
Location: 9938 - 10255 (+)
Gene ID: HRGMv2_1754_3_10
Type: TC
Location: 10323 - 12623 (-)
Type: TC
Location: 10323 - 12623 (-)
Gene ID: HRGMv2_1754_3_11
Type: pfam
Location: 12783 - 13877 (+)
Type: pfam
Location: 12783 - 13877 (+)
Gene ID: HRGMv2_1754_3_12
Type:
Location: 13925 - 14068 (-)
Type:
Location: 13925 - 14068 (-)
Gene ID: HRGMv2_1754_3_13
Type: CAZyme
Location: 14124 - 15518 (-)
Type: CAZyme
Location: 14124 - 15518 (-)
Gene ID: HRGMv2_1754_3_14
Type: TC
Location: 15614 - 17452 (-)
Type: TC
Location: 15614 - 17452 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1754_3_12 | vegetarian > omnivore | 1.57879 | 0.00460 |
| HRGMv2_1754_3_13 | vegetarian > omnivore | 1.58052 | 0.00460 |