Cluster: HRGMv2_1754_CGC6
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1754
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1754_2 | HRGMv2_1754_2_220 | 218911 | 219939 | + | GT9 |
| TC | HRGMv2_1754_2 | HRGMv2_1754_2_221 | 219889 | 220554 | - | 2.A.115.2.7 |
| pfam | HRGMv2_1754_2 | HRGMv2_1754_2_222 | 220745 | 222286 | + | PFL-like | YjjI-like |
| TC | HRGMv2_1754_2 | HRGMv2_1754_2_223 | 222329 | 224194 | - | 2.A.16.2.2 |
| TC | HRGMv2_1754_2 | HRGMv2_1754_2_224 | 224194 | 224499 | - | 9.B.21.2.1 |
Gene ID: HRGMv2_1754_2_220
Type: CAZyme
Location: 218911 - 219939 (+)
Type: CAZyme
Location: 218911 - 219939 (+)
Gene ID: HRGMv2_1754_2_221
Type: TC
Location: 219889 - 220554 (-)
Type: TC
Location: 219889 - 220554 (-)
Gene ID: HRGMv2_1754_2_222
Type: pfam
Location: 220745 - 222286 (+)
Type: pfam
Location: 220745 - 222286 (+)
Gene ID: HRGMv2_1754_2_223
Type: TC
Location: 222329 - 224194 (-)
Type: TC
Location: 222329 - 224194 (-)
Gene ID: HRGMv2_1754_2_224
Type: TC
Location: 224194 - 224499 (-)
Type: TC
Location: 224194 - 224499 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1754_2_220 | vegan > omnivore | 1.43636 | 0.00742 |
| HRGMv2_1754_2_220 | vegetarian > omnivore | 1.13422 | 0.00460 |
| HRGMv2_1754_2_221 | vegan > omnivore | 1.20017 | 0.00742 |
| HRGMv2_1754_2_221 | vegetarian > omnivore | 1.26600 | 0.00460 |