Cluster: HRGMv2_1754_CGC3
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1754
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1754_1 | HRGMv2_1754_1_276 | 309607 | 312633 | - | GH2 |
| pfam | HRGMv2_1754_1 | HRGMv2_1754_1_277 | 312755 | 313954 | - | PMI_typeI_cat | MPI_cupin_dom |
| TC | HRGMv2_1754_1 | HRGMv2_1754_1_278 | 314027 | 314527 | - | 4.A.1.1.1 |
| TC | HRGMv2_1754_1 | HRGMv2_1754_1_279 | 314587 | 316314 | - | 8.A.7.1.1 |
| TC | HRGMv2_1754_1 | HRGMv2_1754_1_280 | 316394 | 316651 | - | 8.A.8.1.1 |
Gene ID: HRGMv2_1754_1_276
Type: CAZyme
Location: 309607 - 312633 (-)
Type: CAZyme
Location: 309607 - 312633 (-)
Gene ID: HRGMv2_1754_1_277
Type: pfam
Location: 312755 - 313954 (-)
Type: pfam
Location: 312755 - 313954 (-)
Gene ID: HRGMv2_1754_1_278
Type: TC
Location: 314027 - 314527 (-)
Type: TC
Location: 314027 - 314527 (-)
Gene ID: HRGMv2_1754_1_279
Type: TC
Location: 314587 - 316314 (-)
Type: TC
Location: 314587 - 316314 (-)
Gene ID: HRGMv2_1754_1_280
Type: TC
Location: 316394 - 316651 (-)
Type: TC
Location: 316394 - 316651 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1754_1_278 | vegan > omnivore | 2.66314 | 0.00742 |
| HRGMv2_1754_1_278 | vegetarian > omnivore | 2.38447 | 0.00460 |
| HRGMv2_1754_1_280 | vegetarian > omnivore | 1.10931 | 0.00460 |