Cluster: HRGMv2_1754_CGC23
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1754
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1754_16 | HRGMv2_1754_16_58 | 36956 | 37339 | - | 1.A.22.1.1 |
| TC | HRGMv2_1754_16 | HRGMv2_1754_16_59 | 37418 | 38794 | - | 2.A.38.1.1 |
| CAZyme | HRGMv2_1754_16 | HRGMv2_1754_16_60 | 38791 | 39606 | - | GT2 |
Gene ID: HRGMv2_1754_16_58
Type: TC
Location: 36956 - 37339 (-)
Type: TC
Location: 36956 - 37339 (-)
Gene ID: HRGMv2_1754_16_59
Type: TC
Location: 37418 - 38794 (-)
Type: TC
Location: 37418 - 38794 (-)
Gene ID: HRGMv2_1754_16_60
Type: CAZyme
Location: 38791 - 39606 (-)
Type: CAZyme
Location: 38791 - 39606 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1754_16_58 | vegan > omnivore | 1.61758 | 0.00742 |
| HRGMv2_1754_16_58 | vegetarian > omnivore | 3.15319 | 0.00460 |
| HRGMv2_1754_16_59 | vegetarian > omnivore | 1.35677 | 0.00460 |
| HRGMv2_1754_16_60 | vegan > omnivore | 1.61156 | 0.00742 |
| HRGMv2_1754_16_60 | vegetarian > omnivore | 1.00718 | 0.00460 |