Cluster: HRGMv2_1754_CGC20
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1754
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1754_10 | HRGMv2_1754_10_45 | 49455 | 50579 | - | 1.B.1.3.3 |
| CAZyme | HRGMv2_1754_10 | HRGMv2_1754_10_46 | 50743 | 51696 | - | GT9 |
| TC | HRGMv2_1754_10 | HRGMv2_1754_10_47 | 51693 | 52598 | - | 2.A.7.3.58 |
| CAZyme | HRGMv2_1754_10 | HRGMv2_1754_10_48 | 52595 | 53638 | - | GT9 |
Gene ID: HRGMv2_1754_10_45
Type: TC
Location: 49455 - 50579 (-)
Type: TC
Location: 49455 - 50579 (-)
Gene ID: HRGMv2_1754_10_46
Type: CAZyme
Location: 50743 - 51696 (-)
Type: CAZyme
Location: 50743 - 51696 (-)
Gene ID: HRGMv2_1754_10_47
Type: TC
Location: 51693 - 52598 (-)
Type: TC
Location: 51693 - 52598 (-)
Gene ID: HRGMv2_1754_10_48
Type: CAZyme
Location: 52595 - 53638 (-)
Type: CAZyme
Location: 52595 - 53638 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1754_10_46 | vegan > omnivore | 1.24814 | 0.00742 |
| HRGMv2_1754_10_46 | vegetarian > omnivore | 1.74014 | 0.00460 |