Cluster: HRGMv2_1754_CGC2
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1754
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1754_1 | HRGMv2_1754_1_176 | 196703 | 198370 | - | 4.A.1.1.11 |
| pfam | HRGMv2_1754_1 | HRGMv2_1754_1_177 | 198381 | 199172 | - | Exo_endo_phos |
| CAZyme | HRGMv2_1754_1 | HRGMv2_1754_1_178 | 199182 | 202955 | - | GH77 | GT35 |
| TF | HRGMv2_1754_1 | HRGMv2_1754_1_179 | 203150 | 203863 | + | GntR |
| TC | HRGMv2_1754_1 | HRGMv2_1754_1_180 | 203944 | 204888 | - | 2.A.16.1.2 |
Gene ID: HRGMv2_1754_1_176
Type: TC
Location: 196703 - 198370 (-)
Type: TC
Location: 196703 - 198370 (-)
Gene ID: HRGMv2_1754_1_177
Type: pfam
Location: 198381 - 199172 (-)
Type: pfam
Location: 198381 - 199172 (-)
Gene ID: HRGMv2_1754_1_178
Type: CAZyme
Location: 199182 - 202955 (-)
Type: CAZyme
Location: 199182 - 202955 (-)
Gene ID: HRGMv2_1754_1_179
Type: TF
Location: 203150 - 203863 (+)
Type: TF
Location: 203150 - 203863 (+)
Gene ID: HRGMv2_1754_1_180
Type: TC
Location: 203944 - 204888 (-)
Type: TC
Location: 203944 - 204888 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.