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Cluster: HRGMv2_1754_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1754_10 HRGMv2_1754_10_33 35590 36480 + 3.A.1.14.1
TC HRGMv2_1754_10 HRGMv2_1754_10_34 36480 37469 + 3.A.1.14.1
TC HRGMv2_1754_10 HRGMv2_1754_10_35 37469 38452 + 3.A.1.14.1
TC HRGMv2_1754_10 HRGMv2_1754_10_36 38452 39219 + 3.A.1.14.8
TC HRGMv2_1754_10 HRGMv2_1754_10_37 39430 39876 + 1.B.55.1.3
TC HRGMv2_1754_10 HRGMv2_1754_10_38 39907 41853 + 1.B.55.1.3
CAZyme HRGMv2_1754_10 HRGMv2_1754_10_39 41875 43791 + CE4 | GH153
CAZyme HRGMv2_1754_10 HRGMv2_1754_10_40 43801 45042 + GT2
Gene ID: HRGMv2_1754_10_33
Type: TC
Location: 35590 - 36480 (+)
Gene ID: HRGMv2_1754_10_34
Type: TC
Location: 36480 - 37469 (+)
Gene ID: HRGMv2_1754_10_35
Type: TC
Location: 37469 - 38452 (+)
Gene ID: HRGMv2_1754_10_36
Type: TC
Location: 38452 - 39219 (+)
Gene ID: HRGMv2_1754_10_37
Type: TC
Location: 39430 - 39876 (+)
Gene ID: HRGMv2_1754_10_38
Type: TC
Location: 39907 - 41853 (+)
Gene ID: HRGMv2_1754_10_39
Type: CAZyme
Location: 41875 - 43791 (+)
Gene ID: HRGMv2_1754_10_40
Type: CAZyme
Location: 43801 - 45042 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1754_10_33 vegetarian > omnivore 1.47232 0.00460
HRGMv2_1754_10_34 vegetarian > omnivore 1.41944 0.00460

🧭 Explore Read Mapping of CGC

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