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Cluster: HRGMv2_1754_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1754_9 HRGMv2_1754_9_64 70722 72626 + 2.A.37.1.2
pfam HRGMv2_1754_9 HRGMv2_1754_9_65 72658 74793 - UPF0020 | THUMP | Cons_hypoth95 | Methyltrans_SAM | RlmL_1st
TC HRGMv2_1754_9 HRGMv2_1754_9_66 74913 75893 - 3.A.1.15.5
pfam HRGMv2_1754_9 HRGMv2_1754_9_67 76062 76823 - ThiF
CAZyme HRGMv2_1754_9 HRGMv2_1754_9_68 76823 77950 - GH102
Gene ID: HRGMv2_1754_9_64
Type: TC
Location: 70722 - 72626 (+)
Gene ID: HRGMv2_1754_9_65
Type: pfam
Location: 72658 - 74793 (-)
Gene ID: HRGMv2_1754_9_66
Type: TC
Location: 74913 - 75893 (-)
Gene ID: HRGMv2_1754_9_67
Type: pfam
Location: 76062 - 76823 (-)
Gene ID: HRGMv2_1754_9_68
Type: CAZyme
Location: 76823 - 77950 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1754_9_64 vegetarian > omnivore 1.11491 0.00460
HRGMv2_1754_9_64 vegetarian > vegan 1.10044 0.03493
HRGMv2_1754_9_65 vegan > omnivore 1.33351 0.00742
HRGMv2_1754_9_65 vegetarian > omnivore 1.40327 0.00460
HRGMv2_1754_9_66 vegan > omnivore 1.28523 0.00742
HRGMv2_1754_9_66 vegetarian > omnivore 1.01506 0.00460
HRGMv2_1754_9_67 vegetarian > omnivore 1.52732 0.00460
HRGMv2_1754_9_67 vegan > omnivore 1.41407 0.00742
HRGMv2_1754_9_68 vegetarian > omnivore 1.24125 0.00460

🧭 Explore Read Mapping of CGC

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