dbCAN HGM

Cluster: HRGMv2_1754_CGC17

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
TC	HRGMv2_1754_9	HRGMv2_1754_9_19	19777	20955	+	2.A.1.2.18
TC	HRGMv2_1754_9	HRGMv2_1754_9_20	21003	21986	-	3.A.1.5.27
TC	HRGMv2_1754_9	HRGMv2_1754_9_21	21979	22962	-	3.A.1.5.27
TC	HRGMv2_1754_9	HRGMv2_1754_9_22	22971	23867	-	3.A.1.5.27
TC	HRGMv2_1754_9	HRGMv2_1754_9_23	23880	24884	-	3.A.1.5.27
pfam	HRGMv2_1754_9	HRGMv2_1754_9_24	24993	27170	-	UvrD-helicase \| AAA_19 \| UvrD_C \| UvrD_C_2 \| PcrA_UvrD_tudor
TC	HRGMv2_1754_9	HRGMv2_1754_9_25	27316	28362	+	3.A.1.20.2
CAZyme	HRGMv2_1754_9	HRGMv2_1754_9_26	28413	29330	-	GT8
pfam	HRGMv2_1754_9	HRGMv2_1754_9_27	29398	30207	-	FdhD-NarQ
TC	HRGMv2_1754_9	HRGMv2_1754_9_28	30483	31094	+	5.A.3.2.1
TC	HRGMv2_1754_9	HRGMv2_1754_9_29	31143	33566	+	5.A.3.2.1
TC	HRGMv2_1754_9	HRGMv2_1754_9_30	33568	34503	+	5.A.3.2.1
TC	HRGMv2_1754_9	HRGMv2_1754_9_31	34496	35212	+	5.A.3.2.1

Gene ID: HRGMv2_1754_9_19
Type: TC
Location: 19777 - 20955 (+)

Gene ID: HRGMv2_1754_9_20
Type: TC
Location: 21003 - 21986 (-)

Gene ID: HRGMv2_1754_9_21
Type: TC
Location: 21979 - 22962 (-)

Gene ID: HRGMv2_1754_9_22
Type: TC
Location: 22971 - 23867 (-)

Gene ID: HRGMv2_1754_9_23
Type: TC
Location: 23880 - 24884 (-)

Gene ID: HRGMv2_1754_9_24
Type: pfam
Location: 24993 - 27170 (-)

Gene ID: HRGMv2_1754_9_25
Type: TC
Location: 27316 - 28362 (+)

Gene ID: HRGMv2_1754_9_26
Type: CAZyme
Location: 28413 - 29330 (-)

Gene ID: HRGMv2_1754_9_27
Type: pfam
Location: 29398 - 30207 (-)

Gene ID: HRGMv2_1754_9_28
Type: TC
Location: 30483 - 31094 (+)

Gene ID: HRGMv2_1754_9_29
Type: TC
Location: 31143 - 33566 (+)

Gene ID: HRGMv2_1754_9_30
Type: TC
Location: 33568 - 34503 (+)

Gene ID: HRGMv2_1754_9_31
Type: TC
Location: 34496 - 35212 (+)

Taxonomic Lineage

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Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Gene ID	Condition Pair	log2FC	FDR P-value
HRGMv2_1754_9_28	vegan > omnivore	1.25278	0.00742
HRGMv2_1754_9_29	vegan > omnivore	1.19996	0.00742

Gene ID	Condition Pair	log2FC	FDR P-value
HRGMv2_1754_9_22	vegan > omnivore	1.35135	0.00191
HRGMv2_1754_9_24	vegan > omnivore	1.63434	0.00191
HRGMv2_1754_9_28	vegan > flexitarian	1.54674	0.02427
HRGMv2_1754_9_31	vegan > omnivore	2.51683	0.00191

Gene ID	Condition Pair	log2FC	FDR P-value
HRGMv2_1754_9_20	nonIBD > CD	1.46376	0.00082
HRGMv2_1754_9_23	UC > CD	2.70329	0.00008
HRGMv2_1754_9_23	nonIBD > CD	3.14644	0.00082
HRGMv2_1754_9_28	UC > CD	1.89734	0.00008
HRGMv2_1754_9_29	UC > CD	1.13934	0.00008
HRGMv2_1754_9_30	UC > CD	4.45934	0.00008
HRGMv2_1754_9_30	nonIBD > CD	2.58751	0.00082
HRGMv2_1754_9_31	UC > CD	19.94195	0.00008
HRGMv2_1754_9_31	nonIBD > CD	18.89475	0.00082