Cluster: HRGMv2_1754_CGC16
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1754
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1754_7 | HRGMv2_1754_7_81 | 86080 | 86751 | - | 3.A.1.122.8 |
| pfam | HRGMv2_1754_7 | HRGMv2_1754_7_82 | 86753 | 87886 | - | FtsX | MacB_PCD |
| TC | HRGMv2_1754_7 | HRGMv2_1754_7_83 | 87873 | 89213 | - | 3.A.1.122.8 |
| pfam | HRGMv2_1754_7 | HRGMv2_1754_7_84 | 89213 | 90607 | - | YHS | FtrD-like |
| TC | HRGMv2_1754_7 | HRGMv2_1754_7_85 | 90723 | 91244 | - | 2.A.108.2.10 |
| TC | HRGMv2_1754_7 | HRGMv2_1754_7_86 | 91273 | 93177 | - | 2.A.108.2.10 |
| CAZyme | HRGMv2_1754_7 | HRGMv2_1754_7_87 | 93397 | 95796 | - | GT51 |
Gene ID: HRGMv2_1754_7_81
Type: TC
Location: 86080 - 86751 (-)
Type: TC
Location: 86080 - 86751 (-)
Gene ID: HRGMv2_1754_7_82
Type: pfam
Location: 86753 - 87886 (-)
Type: pfam
Location: 86753 - 87886 (-)
Gene ID: HRGMv2_1754_7_83
Type: TC
Location: 87873 - 89213 (-)
Type: TC
Location: 87873 - 89213 (-)
Gene ID: HRGMv2_1754_7_84
Type: pfam
Location: 89213 - 90607 (-)
Type: pfam
Location: 89213 - 90607 (-)
Gene ID: HRGMv2_1754_7_85
Type: TC
Location: 90723 - 91244 (-)
Type: TC
Location: 90723 - 91244 (-)
Gene ID: HRGMv2_1754_7_86
Type: TC
Location: 91273 - 93177 (-)
Type: TC
Location: 91273 - 93177 (-)
Gene ID: HRGMv2_1754_7_87
Type: CAZyme
Location: 93397 - 95796 (-)
Type: CAZyme
Location: 93397 - 95796 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1754_7_84 | vegetarian > vegan | 1.89261 | 0.01684 |
| HRGMv2_1754_7_86 | vegetarian > vegan | 1.16276 | 0.03493 |