Cluster: HRGMv2_1754_CGC15
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_1754
- CGC Family ID: CGCFAM_01708
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1754_7 | HRGMv2_1754_7_66 | 73686 | 74456 | + | GT25 |
| NULL(UNKNOWN) | HRGMv2_1754_7 | HRGMv2_1754_7_67 | 74464 | 75663 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_1754_7 | HRGMv2_1754_7_68 | 75656 | 76537 | + | GT2 |
| NULL(UNKNOWN) | HRGMv2_1754_7 | HRGMv2_1754_7_69 | 76576 | 76914 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_1754_7 | HRGMv2_1754_7_70 | 76955 | 77758 | + | GT2 |
| CAZyme | HRGMv2_1754_7 | HRGMv2_1754_7_71 | 77792 | 78901 | + | GH103 |
| pfam | HRGMv2_1754_7 | HRGMv2_1754_7_72 | 78981 | 80120 | + | CCP_MauG |
| STP | HRGMv2_1754_7 | HRGMv2_1754_7_73 | 80219 | 81334 | + | Peripla_BP_2 |
| TC | HRGMv2_1754_7 | HRGMv2_1754_7_74 | 81350 | 82399 | + | 3.A.1.14.5 |
| TC | HRGMv2_1754_7 | HRGMv2_1754_7_75 | 82399 | 83172 | + | 3.A.1.14.19 |
Gene ID: HRGMv2_1754_7_66
Type: CAZyme
Location: 73686 - 74456 (+)
Type: CAZyme
Location: 73686 - 74456 (+)
Gene ID: HRGMv2_1754_7_67
Type:
Location: 74464 - 75663 (+)
Type:
Location: 74464 - 75663 (+)
Gene ID: HRGMv2_1754_7_68
Type: CAZyme
Location: 75656 - 76537 (+)
Type: CAZyme
Location: 75656 - 76537 (+)
Gene ID: HRGMv2_1754_7_69
Type:
Location: 76576 - 76914 (+)
Type:
Location: 76576 - 76914 (+)
Gene ID: HRGMv2_1754_7_70
Type: CAZyme
Location: 76955 - 77758 (+)
Type: CAZyme
Location: 76955 - 77758 (+)
Gene ID: HRGMv2_1754_7_71
Type: CAZyme
Location: 77792 - 78901 (+)
Type: CAZyme
Location: 77792 - 78901 (+)
Gene ID: HRGMv2_1754_7_72
Type: pfam
Location: 78981 - 80120 (+)
Type: pfam
Location: 78981 - 80120 (+)
Gene ID: HRGMv2_1754_7_73
Type: STP
Location: 80219 - 81334 (+)
Type: STP
Location: 80219 - 81334 (+)
Gene ID: HRGMv2_1754_7_74
Type: TC
Location: 81350 - 82399 (+)
Type: TC
Location: 81350 - 82399 (+)
Gene ID: HRGMv2_1754_7_75
Type: TC
Location: 82399 - 83172 (+)
Type: TC
Location: 82399 - 83172 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1754_7_68 | vegetarian > omnivore | 2.19609 | 0.00460 |
| HRGMv2_1754_7_68 | vegetarian > vegan | 1.69038 | 0.04197 |
| HRGMv2_1754_7_73 | vegan > omnivore | 1.43599 | 0.00742 |
| HRGMv2_1754_7_73 | vegetarian > omnivore | 1.12537 | 0.00460 |