Cluster: HRGMv2_1754_CGC12
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1754
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1754_6 | HRGMv2_1754_6_37 | 33591 | 35435 | - | 3.A.1.106.2 |
| TF | HRGMv2_1754_6 | HRGMv2_1754_6_38 | 35512 | 36402 | - | HTH_AraC | HTH_AraC |
| pfam | HRGMv2_1754_6 | HRGMv2_1754_6_39 | 36506 | 36850 | + | CMD |
| CAZyme | HRGMv2_1754_6 | HRGMv2_1754_6_40 | 36920 | 37975 | - | GT9 |
Gene ID: HRGMv2_1754_6_37
Type: TC
Location: 33591 - 35435 (-)
Type: TC
Location: 33591 - 35435 (-)
Gene ID: HRGMv2_1754_6_38
Type: TF
Location: 35512 - 36402 (-)
Type: TF
Location: 35512 - 36402 (-)
Gene ID: HRGMv2_1754_6_39
Type: pfam
Location: 36506 - 36850 (+)
Type: pfam
Location: 36506 - 36850 (+)
Gene ID: HRGMv2_1754_6_40
Type: CAZyme
Location: 36920 - 37975 (-)
Type: CAZyme
Location: 36920 - 37975 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1754_6_37 | vegetarian > vegan | 1.15085 | 0.03493 |
| HRGMv2_1754_6_38 | vegetarian > vegan | 1.38242 | 0.03493 |
| HRGMv2_1754_6_39 | vegan > omnivore | 1.24860 | 0.00742 |
| HRGMv2_1754_6_39 | vegetarian > omnivore | 1.59594 | 0.00460 |
| HRGMv2_1754_6_40 | vegetarian > omnivore | 1.05623 | 0.00460 |
| HRGMv2_1754_6_40 | vegetarian > vegan | 1.28811 | 0.03493 |