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Cluster: HRGMv2_1754_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1754_4 HRGMv2_1754_4_87 88254 89663 + 2.A.1.3.51
TC HRGMv2_1754_4 HRGMv2_1754_4_88 89797 91443 + 3.A.1.5.27
pfam HRGMv2_1754_4 HRGMv2_1754_4_89 91510 92142 + PNPOx_N | PNP_phzG_C | Pyridox_oxase_2
CAZyme HRGMv2_1754_4 HRGMv2_1754_4_90 92218 93324 - GH177
pfam HRGMv2_1754_4 HRGMv2_1754_4_91 93335 94408 - GFO_IDH_MocA | GFO_IDH_MocA_C | NAD_binding_3 | F420_oxidored | GFO_IDH_MocA_C3
TF HRGMv2_1754_4 HRGMv2_1754_4_92 94398 95120 - GntR
TC HRGMv2_1754_4 HRGMv2_1754_4_93 95282 96508 + 2.A.1.12.1
TC HRGMv2_1754_4 HRGMv2_1754_4_94 96664 98049 + 2.A.47.5.2
Gene ID: HRGMv2_1754_4_87
Type: TC
Location: 88254 - 89663 (+)
Gene ID: HRGMv2_1754_4_88
Type: TC
Location: 89797 - 91443 (+)
Gene ID: HRGMv2_1754_4_89
Type: pfam
Location: 91510 - 92142 (+)
Gene ID: HRGMv2_1754_4_90
Type: CAZyme
Location: 92218 - 93324 (-)
Gene ID: HRGMv2_1754_4_91
Type: pfam
Location: 93335 - 94408 (-)
Gene ID: HRGMv2_1754_4_92
Type: TF
Location: 94398 - 95120 (-)
Gene ID: HRGMv2_1754_4_93
Type: TC
Location: 95282 - 96508 (+)
Gene ID: HRGMv2_1754_4_94
Type: TC
Location: 96664 - 98049 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1754_4_88 vegan > omnivore 1.08994 0.00742

🧭 Explore Read Mapping of CGC

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